rna-gnl|WGS_VKGE|Gotom.D09G244000.1, rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1 (mRNA) Gossypium tomentosum

Transcript Overview
Namerna-gnl|WGS_VKGE|Gotom.D09G244000.1
Unique Namerna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1
TypemRNA
OrganismGossypium tomentosum ()
Producthypothetical protein
Cross References
External references for this mRNA
DatabaseAccession
PhytozomeGotom.D09G244000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM017631.1chromosomeCM017631.1:48322945..48324231 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
actoL0226Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
abtoL1378Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
bhtoL1235Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
actoL1933Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
bhtoL2953Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
adtoL1774Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adtoL3211Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
bztoL0155Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
ghtoL0141Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gautoL1271Gossypium australe (G2) genome CRI_v1.1Gossypium australe
grbtoL0156Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gbtoL1766Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
bztoL1672Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
ghtoL1681Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghttoL1709Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghttoL1822Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghztoL1695Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
grbtoL1498Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
gbtoL3167Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghtoL3045Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
bztoL2989Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
ghttoL3034Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghztoL3026Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gtbtoL0177Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hbtoL0716Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hgstoL0155Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjtoL0146Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hntoL0143Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbtoL2397Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
gtbtoL1576Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
hgstoL1773Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hjtoL1689Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hntoL1806Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hjtoL1805Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hntoL1931Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
rbtoL0226Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hgstoL3158Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rbtoL1603Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hjtoL3076Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
totoL0186Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztoL1668Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hztoL1792Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
rjtoL1106Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
totoR1635Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
totoR1683Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hztoL2993Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
gdtoL0153Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdtoL1791Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdtoL3168Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fntoL1544Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dttoL0144Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dttoL1127Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
hwtoL0168Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwtoL1588Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awtoL0178Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awtoL1571Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
totwR2100Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2168Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2180Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
totwR2233Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
touhR1715Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
touhR1770Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
touhR1808Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtttoL0486Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtotoL0438Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
dtotoL0930Gossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
gtitoL1091Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dritoL0702Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dritoL0789Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dsitoL220Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsitoL649Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dqitoL0042Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
grotoL0204Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
grotoL1738Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
gostoL1550Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
grhtoL0160Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhtoL1531Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
gantoL1514Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
gahtoL0179Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
gahtoL1550Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
ndmtoL0158Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtoL1750Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtoL1874Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
ndmtoL3155Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
pimtoL0156Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
pimtoL1780Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
pimtoL1917Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
pimtoL3207Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
d3ktoL0141Gossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
d9itoL0671Gossypium laxum (D9) genome ISU_v1Gossypium laxum
d9itoL0746Gossypium laxum (D9) genome ISU_v1Gossypium laxum
dootoL0722Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
dootoL0810Gossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
gditoL0759Gossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
bartoL1572Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartoL1677Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
bartoL2838Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbtoL0148Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtoL1566Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbtoL2802Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
a3htoL1669Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3htoL1785Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3htoL2975Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
b1jtoL0188Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
b1jtoL1623Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aoutoL1447Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
gbitoL1956Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gsztoL0316Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gsztoL1141Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gcftoL1510Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gectoL0150Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gectoL1728Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gectoL1853Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gectoL3099Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
grztoL939Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
adstoL0154Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adstoL1667Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adstoL1786Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adstoL2975Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
jmbtoL0161Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtoL1699Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtoL1818Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
jmbtoL3034Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
a1ztoL1606Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1wtoL0182Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1wtoL1539Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
b1htoL1633Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
c1htoL1672Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
e1htoL1664Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
f1htoL1591Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
g1htoL1756Gossypium bickii (G1) genome HAU_v1Gossypium bickii
dkctoL0534Gossypium klotzschianum (D3-k) genome CRI_v1Gossypium klotzschianum
d6ctoL0063Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d6ctoL0552Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d8ctoL0052Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
d8ctoL0536Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
psctoL1565Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctoL1669Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
psctoL2821Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adytoL0156Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytoL1651Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytoL1763Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adytoL2970Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hpftoL1644Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftoL1762Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hpftoL2972Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
ghctoL1788Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghctoL3170Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
ghutoL1767Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghutoL3176Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
ghatoL1743Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
ghatoL3125Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
t2ttoL0180Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
t2ttoL1605Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
tmhtoL1672Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
tmhtoL2835Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
d3htoL1733Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
d3htoL3114Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
atttoL0158Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atttoL1689Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atttoL1804Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
atttoL3019Gossypium hirsutum (AD1) 'TM-1' T2T genome JZU_v1.0Gossypium hirsutum
adutoL1781Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adutoL3187Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
aemtoL0161Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemtoL3099Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
aemtoL3100Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
azmtoL1747Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
GhirPA0901T217400.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
rna-gnl|WGS:JABFAF|Goshw_00029072-RAGossypium schwendimanii (D11) genome ISU_v1 Gossypium schwendimanii
Gstu09G025550.1Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
Grot_09G025010.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
EVM_prediction_Ga09G2401Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Goano.009G235800-1Gossypium anomalum (B1) genome NSF_v1Gossypium anomalum
Gothu.00041328-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
GH_A09G02239_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
GhirPD0901T216600.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
rna-gnl|WGS:VKDL|Gobar.D09G227200.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gohir.A09G212700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gtri_9G002366.mRNA1Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
GstD0901T040700.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
Gh_D09G223600.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
EVM0007864.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gene-EPI10_017757-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
GekA0901T044400.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
rna-gnl|WGS_VKGI|Godar.A09G247500.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Cotton_D_gene_10001348Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
genemark-Dt_09-g-3.35-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
CotAD_26500Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GH_A09G2289Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
CotAD_45873Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GekD0901T040200.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
Gbscaffold9972.12.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Gohir.D09G206300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GstA0901T041700.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
TURN.09g241050.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
Gosto.009G040800-1Gossypium stocksii (E1) genome NSF_v1Gossypium stocksii
Ghir_A09G022200.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GhUA48.A09G242000.1Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
rna-gnl|WGS:VKDL|Gobar.A09G223100.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gbar_A09G022300.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
GhM_D09G2450.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gohir.D09G206300.2Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
GhUGA230.A09G240900.1Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
gene-E1A91_A09G227000v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gohir.D09G206300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rna-gnl|WGS:JABFAB|Goklo_00030370-RAGossypium klotzschianum (D3-k) genome ISU_v1Gossypium klotzschianum
Gklo_9G002980.mRNA1Gossypium klotzschianum (D3-k) genome CRI_v1Gossypium klotzschianum
Ghir_D09G021470.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gsto_09G004420.2Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
Ggos_9G002390.mRNA1Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
Ghir_D09_G02568.t1Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
gene-E1A91_D09G235500v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GR09G3261.t1Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00015524-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
XM_017754500.2Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
GhM_A09G2570.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
D5.v1.pred_00030069-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Cotton_A_19783Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
genemark-Dt_09-proG-3.35-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Golon.009G238000-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Ghicr24_D09G221200.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gher_09G004600.1Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
Ghi_A09G13371Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rna-gnl|WGS:JABFAE|Goarm_00015264-RAGossypium armourianum (D2-1) genome ISU_v1Gossypium armourianum
Ghicr24_A09G233300.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
A09G26950.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GH_D09G02284_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Glon_09G029650.1Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
GbM_D09G2497.1Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
D09G24400.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
rna-gnl|WGS:JABFAC|Godav_00023696-RAGossypium davidsonii (D3d-27) genome ISU_v1Gossypium davidsonii
GhirA09G026130.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
Gh_D09G2015Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
genemark-At_09-g-3.277-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
GB_D09G2240Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS:JAIQCV|GS06G_29280Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
Ghir_D09G50593.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
rna-gnl|WGS_VKGI|Godar.D09G247800.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
genemark-At_09-proG-3.277-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
Gbar_D09G022050.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Gano_09G004370.1Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
Gbar_A09G47001.1Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
genemark-Dt_09_GB713-gene-3.391-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
Garb_09G025630.1Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
GhUA48.D09G237000.1Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
Gh_A09G232600.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Ghir_A09G47723.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v2.0Gossypium hirsutum
rna-gnl|WGS:JABEZX|Golob_00017562-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
GB_A09G2392Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gar09G25640Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Ghi_D09G09781Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
GhirA09G024010.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
Gbi09G2909.1Gossypium bickii (G1) genome JZU_v1Gossypium bickii
rna-gnl|WGS:JABEZY|Gogos_00020316-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
GhCSX8308.A09G238400.1Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
Gohir.A09G212700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
rna-gnl|WGS:JABEZV|Golax_00016347-RAGossypium laxum (D9) genome ISU_v1Gossypium laxum
A1.A1_09G239300-1Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
rna-gnl|WGS:JABFAD|Gohar_00021599-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
Gbar_D09G49850.1Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
XM_012631599.2Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
Gheraf_09G026160.1Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
Gbic_09G026080.1Gossypium bickii (G1) genome HAU_v1Gossypium bickii
GhUGA230.D09G233800.1Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
genemark-At_09_GB713-gene-84.506-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
GhCSX8308.D09G234500.1Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
Gorai.006G230200.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Grai_09G025040.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
Gohir.A09G212700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
Ghe09G26660Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
evm.model.Goano09G0450Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
GbM_A09G2573.1Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
GH_D09G2225Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gm0557370.1Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
Gm0528320.1Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
rna-gnl|WGS_VKGE|Gotom.A09G243400.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-ES332_D09G244000v1gene-ES332_D09G244000v1_HGS-AD3_v1.1Gossypium tomentosumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-gnl|WGS_VKGE|Gotom.D09G244000.1-1exon-gnl|WGS_VKGE|Gotom.D09G244000.1-1_HGS-AD3_v1.1Gossypium tomentosumexon
exon-gnl|WGS_VKGE|Gotom.D09G244000.1-2exon-gnl|WGS_VKGE|Gotom.D09G244000.1-2_HGS-AD3_v1.1Gossypium tomentosumexon
exon-gnl|WGS_VKGE|Gotom.D09G244000.1-3exon-gnl|WGS_VKGE|Gotom.D09G244000.1-3_HGS-AD3_v1.1Gossypium tomentosumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-TYH55582.1cds-TYH55582.1_HGS-AD3_v1.1Gossypium tomentosumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl|WGS_VKGE|Gotom.D09G244000.1rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1-proteinGossypium tomentosumpolypeptide
rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1Gossypium tomentosumpolypeptide


Homology
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|823178194|ref|XP_012487053.1| (PREDICTED: uncharacterized protein LOC105800447 [Gossypium raimondii] >gi|1028986505|ref|XP_016748127.1| PREDICTED: uncharacterized protein LOC107957189 [Gossypium hirsutum] >gi|1029013309|ref|XP_016670531.1| PREDICTED: uncharacterized protein LOC107890556 [Gossypium hirsutum] >gi|1050577901|ref|XP_017609989.1| PREDICTED: uncharacterized protein LOC108455923 [Gossypium arboreum] >gi|728845116|gb|KHG24559.1| Subtilisin-like protease 3 [Gossypium arboreum] >gi|763770772|gb|KJB37987.1| hypothetical protein B456_006G230200 [Gossypium raimondii] >gi|1347702644|gb|PPS01606.1| hypothetical protein GOBAR_AA19059 [Gossypium barbadense])

HSP 1 Score: 201.83 bits (512), Expect = 1.198e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|1269899695|ref|XP_022760985.1| (uncharacterized protein LOC111307235 isoform X1 [Durio zibethinus] >gi|1269899697|ref|XP_022760987.1| uncharacterized protein LOC111307235 isoform X1 [Durio zibethinus])

HSP 1 Score: 185.652 bits (470), Expect = 2.721e-59
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MG SSW RGVGN+RSFIGNSMGGLRG +NLASWVVAGTLAYFLWVKPSQDLKKQQQE+AALA SDPYRY+EKRKPIPDPQE GLIYG KKKTDSKTEE
Sbjct:    1 MGSSSWRRGVGNVRSFIGNSMGGLRGTSNLASWVVAGTLAYFLWVKPSQDLKKQQQEKAALATSDPYRYVEKRKPIPDPQETGLIYGKKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|1063518121|ref|XP_017980863.1| (PREDICTED: uncharacterized protein LOC18592077 [Theobroma cacao] >gi|508723983|gb|EOY15880.1| Uncharacterized protein TCM_034812 [Theobroma cacao])

HSP 1 Score: 179.874 bits (455), Expect = 4.695e-57
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            SSW R VGN+RSF+GNSMGGLRG +NLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRY+EKRKP+PDPQE GLIYGNKKKTDSK EE
Sbjct:    3 SSWRRTVGNVRSFVGNSMGGLRGASNLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYVEKRKPLPDPQEMGLIYGNKKKTDSKKEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|1269899699|ref|XP_022760988.1| (uncharacterized protein LOC111307235 isoform X2 [Durio zibethinus])

HSP 1 Score: 177.948 bits (450), Expect = 3.430e-56
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MG SSW RGVGN+RSFIGNSMGGLRG +NLASWVVAGTLAYFLWVKPSQDLKKQQQ  AALA SDPYRY+EKRKPIPDPQE GLIYG KKKTDSKTEE
Sbjct:    1 MGSSSWRRGVGNVRSFIGNSMGGLRGTSNLASWVVAGTLAYFLWVKPSQDLKKQQQ--AALATSDPYRYVEKRKPIPDPQETGLIYGKKKKTDSKTEE 96          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|1269945414|ref|XP_022722281.1| (uncharacterized protein LOC111279592 [Durio zibethinus])

HSP 1 Score: 172.17 bits (435), Expect = 5.156e-54
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            SSW R VGN+RSF+GN MGGLRG +NLASWVVAGTLAYFLWVKPS+DL+KQQQER ALA SDPYRY+EKRKPIPDPQE GLIYGNKKK+DSKTEE
Sbjct:    4 SSWGRRVGNVRSFMGNLMGGLRGSSNLASWVVAGTLAYFLWVKPSRDLQKQQQERVALAGSDPYRYVEKRKPIPDPQETGLIYGNKKKSDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|802604326|ref|XP_012073563.1| (uncharacterized protein LOC105635169 [Jatropha curcas] >gi|643728801|gb|KDP36738.1| hypothetical protein JCGZ_08029 [Jatropha curcas])

HSP 1 Score: 167.933 bits (424), Expect = 2.634e-52
Identity = 78/94 (82.98%), Postives = 86/94 (91.49%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTE 97
            S+W R +GN+RSFIGNSMGGLRGG+NLASWVVAGTLAYFLWVKPSQDLK++QQERAALAA+DPYRY+EKRKPIPDPQE GLIYGNK KT    E
Sbjct:    3 SNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERAALAAADPYRYVEKRKPIPDPQETGLIYGNKNKTKKPVE 96          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|763770774|gb|KJB37989.1| (hypothetical protein B456_006G230200 [Gossypium raimondii])

HSP 1 Score: 166.007 bits (419), Expect = 1.119e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ 80
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ 80          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|449438867|ref|XP_004137209.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X2 [Cucumis sativus] >gi|700198449|gb|KGN53607.1| hypothetical protein Csa_4G089280 [Cucumis sativus])

HSP 1 Score: 165.622 bits (418), Expect = 2.234e-51
Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            M  SSW R +GN+RSFIGNSMGGLRGGANLASWVVAGTLAY+LWVKPSQDLK++QQERAALAA DP+RYIEKRKPIPDPQE GLIYGN K T  K EE
Sbjct:    1 MTSSSWRRSLGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQETGLIYGN-KNTPRKPEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|1227933530|ref|XP_021902643.1| (uncharacterized protein LOC110818181 [Carica papaya])

HSP 1 Score: 165.236 bits (417), Expect = 3.181e-51
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0
Query:    5 SWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTE 97
            SW R +GN+RSFIGNSMGGLRGG+NLASWVVAGTLAYFLWVKPSQDLKK+Q+ RAALAASDP+RY+EKRKPIPDPQE GLIYGNK +T+  +E
Sbjct:    4 SWGRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKKEQEARAALAASDPHRYVEKRKPIPDPQETGLIYGNKNRTNKPSE 96          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Match: gi|659101596|ref|XP_008451690.1| (PREDICTED: uncharacterized protein LOC103492913 isoform X2 [Cucumis melo])

HSP 1 Score: 165.236 bits (417), Expect = 3.209e-51
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            M  SSW R  GN+RSFIGNSMGGLRGGANLASWVVAGTLAY+LWVKPSQDLK++QQERAALAA DP+RYIEKRKPIPDPQE GLIYGN K T  K EE
Sbjct:    1 MTSSSWRRSFGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQETGLIYGN-KNTPQKPEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A2P5XE42_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA19059 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.007e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A0D2NXB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G230200 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.007e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A0B0PJE6_GOSAR (Subtilisin-like protease 3 OS=Gossypium arboreum OX=29729 GN=F383_00757 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.007e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A1U8HWX6_GOSHI (uncharacterized protein LOC107890556 OS=Gossypium hirsutum OX=3635 GN=LOC107890556 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.007e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A061FEX6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034812 PE=4 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.944e-57
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            SSW R VGN+RSF+GNSMGGLRG +NLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRY+EKRKP+PDPQE GLIYGNKKKTDSK EE
Sbjct:    3 SSWRRTVGNVRSFVGNSMGGLRGASNLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYVEKRKPLPDPQEMGLIYGNKKKTDSKKEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A067KP46_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08029 PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.212e-52
Identity = 78/94 (82.98%), Postives = 86/94 (91.49%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTE 97
            S+W R +GN+RSFIGNSMGGLRGG+NLASWVVAGTLAYFLWVKPSQDLK++QQERAALAA+DPYRY+EKRKPIPDPQE GLIYGNK KT    E
Sbjct:    3 SNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERAALAAADPYRYVEKRKPIPDPQETGLIYGNKNKTKKPVE 96          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A0D2S127_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G230200 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.398e-52
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ 80
            MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ
Sbjct:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQ 80          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A0A0KZ01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G089280 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.877e-51
Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            M  SSW R +GN+RSFIGNSMGGLRGGANLASWVVAGTLAY+LWVKPSQDLK++QQERAALAA DP+RYIEKRKPIPDPQE GLIYGN K T  K EE
Sbjct:    1 MTSSSWRRSLGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQETGLIYGN-KNTPRKPEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A1S3BT82_CUCME (uncharacterized protein LOC103492913 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492913 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.696e-51
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 0
Query:    1 MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE 98
            M  SSW R  GN+RSFIGNSMGGLRGGANLASWVVAGTLAY+LWVKPSQDLK++QQERAALAA DP+RYIEKRKPIPDPQE GLIYGN K T  K EE
Sbjct:    1 MTSSSWRRSFGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQETGLIYGN-KNTPQKPEE 97          
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Match: A0A2P4LC96_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_25591 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.720e-51
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 0
Query:    4 SSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQDLKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKK-TDSKTEE 98
            SSW R +GN+RSFIGN+MGGLRGG NLASW VAGTLAYFLWVKPSQDLK++QQERAALAASDP RYIEKRKPIPDPQE GLIYGNK + T SK EE
Sbjct:    3 SSWRRTLGNVRSFIGNTMGGLRGGTNLASWAVAGTLAYFLWVKPSQDLKREQQERAALAASDPNRYIEKRKPIPDPQETGLIYGNKNRVTTSKKEE 98          
The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. NCBI nr
Analysis Date: 2020-01-11 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|823178194|ref|XP_012487053.1|1.198e-65100.00PREDICTED: uncharacterized protein LOC105800447 [G... [more]
gi|1269899695|ref|XP_022760985.1|2.721e-5989.80uncharacterized protein LOC111307235 isoform X1 [D... [more]
gi|1063518121|ref|XP_017980863.1|4.695e-5789.47PREDICTED: uncharacterized protein LOC18592077 [Th... [more]
gi|1269899699|ref|XP_022760988.1|3.430e-5688.78uncharacterized protein LOC111307235 isoform X2 [D... [more]
gi|1269945414|ref|XP_022722281.1|5.156e-5485.26uncharacterized protein LOC111279592 [Durio zibeth... [more]
gi|802604326|ref|XP_012073563.1|2.634e-5282.98uncharacterized protein LOC105635169 [Jatropha cur... [more]
gi|763770774|gb|KJB37989.1|1.119e-51100.00hypothetical protein B456_006G230200 [Gossypium ra... [more]
gi|449438867|ref|XP_004137209.1|2.234e-5182.65PREDICTED: uncharacterized protein LOC101205325 is... [more]
gi|1227933530|ref|XP_021902643.1|3.181e-5181.72uncharacterized protein LOC110818181 [Carica papay... [more]
gi|659101596|ref|XP_008451690.1|3.209e-5182.65PREDICTED: uncharacterized protein LOC103492913 is... [more]
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BLAST of rna-gnl|WGS_VKGE|Gotom.D09G244000.1 vs. ExPASy TrEMBL
Analysis Date: 2020-01-15 (BLASTP of HGS_v1.1 Gossypium tomentosum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5XE42_GOSBA1.007e-65100.00Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2NXB9_GOSRA1.007e-65100.00Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0B0PJE6_GOSAR1.007e-65100.00Subtilisin-like protease 3 OS=Gossypium arboreum O... [more]
A0A1U8HWX6_GOSHI1.007e-65100.00uncharacterized protein LOC107890556 OS=Gossypium ... [more]
A0A061FEX6_THECC3.944e-5789.47Uncharacterized protein OS=Theobroma cacao OX=3641... [more]
A0A067KP46_JATCU2.212e-5282.98Uncharacterized protein OS=Jatropha curcas OX=1804... [more]
A0A0D2S127_GOSRA9.398e-52100.00Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0A0KZ01_CUCSA1.877e-5182.65Uncharacterized protein OS=Cucumis sativus OX=3659... [more]
A0A1S3BT82_CUCME2.696e-5182.65uncharacterized protein LOC103492913 isoform X2 OS... [more]
A0A2P4LC96_QUESU2.720e-5183.33Uncharacterized protein OS=Quercus suber OX=58331 ... [more]
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InterPro
Analysis Name: InterProScan Analysis for HGS_v1.1 Gossypium tomentosum proteins
Date Performed: 2020-01-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..98
NoneNo IPR availablePANTHERPTHR37213FAMILY NOT NAMEDcoord: 1..96

Sequences
The following sequences are available for this feature:

protein sequence of rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1

>rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1; organism=Gossypium tomentosum; type=polypeptide; length=98bp
MGRSSWSRGVGNLRSFIGNSMGGLRGGANLASWVVAGTLAYFLWVKPSQD
LKKQQQERAALAASDPYRYIEKRKPIPDPQENGLIYGNKKKTDSKTEE
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mRNA from alignment at CM017631.1:48322945..48324231+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D09G244000.1; organism=Gossypium tomentosum; type=mRNA; length=1287bp; location=Sequence derived from: CM017631.1:48322945..48324231+ (Gossypium tomentosum
CGAAAGCTGGTTTTAAAACATCTATTACATGTGATTTTTATCctaaacct aaattaattaaacctTAGGGTTTATACATATAcgtatgtatattatttta aggAAGGCCACATCCTATACTTTTCAACTCATAACTCTTTATTACAGTAG ATATAAACTTTAAACCCATTCAacatatttaagaaaaaaaacccaATTGA ACAGAAAGAAGGAAACCAGAAACAATCTTCAAATTTGGACAAGCATGGGG AGGAGCAGTTGGAGCAGAGGAGTGGGGAATTTGAGATCATTCATAGGTAA TTCAATGGGAGGTCTTAGAGGAGGTGCCAATTTAGCTTCTTGGGTTGTTG CTGGAACTCTCGCTTATTTCCTTTGGGTGAAACCTTCTCAAGATCTCAAA AAACAGCAACAGGTTTCTTCCCCCTATCAATTCAGCCAAATCcaacttaa ttttccttttctttttcctcgttTTAAACAAAGGATTTATTGTTGATTTT GTTAGGAAAGGGCAGCTCTTGCAGCTTCGGATCCTTATCGCTATATAGAG AAACGAAAACCAATCCCTGATCCCCAGGTGTTTGATtaaatgcctttttt tttttgcttttatttcaaatattcattaaaattaaagcttatttttcGAC TTTTTATGTGAATGGATGGCAGGAAAATGGATTGATATACGGCAACAAGA AGAAAACTGATAGTAAAACAGAGGAATAATGTCTGATATTACCATTTTGT AAGTTTGGGTTTTCTCTTATAAGTTTCCTGAAGTTATGGGAATCGGGATG GAATGTTGATCGTGTAGTATTAAGTATGATAATCTCATGATAGCTAATTC ATTATCCACTGTACTTGGAGGCACTTTTAACATCCATTACCATTCCTTGC TACAAATTGGAACAAGTACTGTGATTATCAGCAAAATAAGTCAATAAGAG TTTCTTAATACAACCCGTGGCTTCTTTCCAATGGCCCTTTCTTTAGGGTA TGGGAGATTTGTGTGGTGAAAGGGTGATCGCGGGTTGGGCCATTTTGAGC TCAGATCATATTGAATTCTGAGTGTTTTCTGTCCCGATTGAGTCGAATTC AGCTGTTTTCCAATCATGTTATTTTGAGTTTGCATCTGGTTTGGGTTATT ATGTGTTTTGATGGGTAGGTTTAGGGTTCGGGTTTTTTCAACTTCAGATG TTCGATTTGGTGAATTCGGATTTGGACAGTTCGAATTCTTTTTGTCACTT ACAATTTATGGGAAGGGTTTTAACTTTTCAACCATCA
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Coding sequence (CDS) from alignment at CM017631.1:48322945..48324231+

>rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1 ID=rna-gnl|WGS_VKGE|Gotom.D09G244000.1_HGS-AD3_v1.1; Name=rna-gnl|WGS_VKGE|Gotom.D09G244000.1; organism=Gossypium tomentosum; type=CDS; length=297bp; location=Sequence derived from: CM017631.1:48322945..48324231+ (Gossypium tomentosum
ATGGGGAGGAGCAGTTGGAGCAGAGGAGTGGGGAATTTGAGATCATTCAT
AGGTAATTCAATGGGAGGTCTTAGAGGAGGTGCCAATTTAGCTTCTTGGG
TTGTTGCTGGAACTCTCGCTTATTTCCTTTGGGTGAAACCTTCTCAAGAT
CTCAAAAAACAGCAACAGGAAAGGGCAGCTCTTGCAGCTTCGGATCCTTA
TCGCTATATAGAGAAACGAAAACCAATCCCTGATCCCCAGGAAAATGGAT
TGATATACGGCAACAAGAAGAAAACTGATAGTAAAACAGAGGAATAA
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