gene-E1A91_A05G436300v1-mRNA1, rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1 (mRNA) Gossypium mustelinum

Transcript Overview
Namegene-E1A91_A05G436300v1-mRNA1
Unique Namerna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1
TypemRNA
OrganismGossypium mustelinum ()
Producthypothetical protein
Cross References
External references for this mRNA
DatabaseAccession
PhytozomeGomus.A05G436300
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM017640.1chromosomeCM017640.1:111966591..111967381 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
acadL0820Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acadL1207Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acadL1402Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
adrjR1952Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adrjR1962Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adrjR1965Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adrjR2034Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
adhnR3520Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3533Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3567Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3588Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3648Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3658Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3700Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3720Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adhnR3726Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
adadL0241Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adadL0759Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adadL1098Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adadL1223Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adadL1881Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adadL1933Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adgrbR2302Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adgrbR2334Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adgrbR2367Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adgrbR2385Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
adhjR3235Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3246Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3275Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3291Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3355Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3366Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhjR3379Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
adhbR4454Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
adhbR4592Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
adhbR4697Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
adghR2337Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2343Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2363Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2380Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2446Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2457Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adghR2467Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
adgbR2418Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2427Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2449Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2465Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2524Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2528Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2538Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adgbR2552Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
adghzR2744Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghzR2755Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghzR2778Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghzR2862Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghzR2873Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghzR2885Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
adghtR3035Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3042Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3070Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3090Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3159Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3174Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adghtR3185Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adhgsR2607Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adhgsR2617Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adhgsR2639Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adhgsR2653Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adhgsR2722Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adhgsR2738Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
adtoR2617Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtoR2640Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtoR2658Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtoR2719Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtoR2729Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adtoR2743Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
adfnR2439Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adfnR2458Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adfnR2500Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
adfnR2517Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
aduhR2525Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduhR2555Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduhR2572Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduhR2635Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduhR2642Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
aduhR2652Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
adgtiR2480Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adgtiR2492Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adgtiR2500Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adgtiR2603Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
adgroR2689Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adgroR2776Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adgroR2787Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adgroR2805Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
adgrhR2460Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adgrhR2483Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adgrhR2519Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adgrhR2546Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
adgahR2541Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
adgahR2566Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
adgahR2618Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
adgahR2640Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
adndmR3158Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3167Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3196Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3212Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3280Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3289Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3303Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3314Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adndmR3316Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adpimR3197Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3212Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3241Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3257Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3323Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3328Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3343Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
adpimR3357Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
add3dR2523Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
add3dR2536Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
add3dR2545Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
add3dR2647Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
adgbiR2765Gossypium bickii (G1) genome JZU_v1Gossypium bickii
adgbiR2859Gossypium bickii (G1) genome JZU_v1Gossypium bickii
adgbiR2876Gossypium bickii (G1) genome JZU_v1Gossypium bickii
adgbiR2893Gossypium bickii (G1) genome JZU_v1Gossypium bickii
adgecR2838Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2847Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2881Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2898Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2962Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2972Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2983Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
adgecR2996Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
a1zadL0715Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zadL1031Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1zadL1169Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1wadL0694Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1wadL1004Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
a1wadL1143Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
adc1hR2570Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
adc1hR2644Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
adc1hR2664Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
adc1hR2670Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
adb1hR2560Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
adb1hR2594Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
adb1hR2628Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
adb1hR2644Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
ade1hR2600Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
ade1hR2621Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
ade1hR2662Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
adf1hR2600Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
adg1hR2673Gossypium bickii (G1) genome HAU_v1Gossypium bickii
adf1hR2672Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
adf1hR2685Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
adg1hR2755Gossypium bickii (G1) genome HAU_v1Gossypium bickii
adg1hR2765Gossypium bickii (G1) genome HAU_v1Gossypium bickii
adg1hR2781Gossypium bickii (G1) genome HAU_v1Gossypium bickii
adghcR2519Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghcR2527Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghuR2561Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghcR2548Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghuR2583Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghcR2563Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghuR2601Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghaR2576Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adghcR2624Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghuR2659Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghuR2668Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghaR2593Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adghcR2642Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghcR2645Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
adghuR2678Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
adghaR2650Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adghaR2658Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adghaR2667Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adghaR2679Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
adt2tR2501Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
adt2tR2525Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
adt2tR2565Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
adt2tR2584Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
add3hR2118Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
add3hR2136Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
add3hR2150Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
add3hR2213Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
adaduR2660Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduR2676Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduR2746Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaduR2757Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
adaemR2882Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR2890Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR2912Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR2934Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR2996Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR3006Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adaemR3022Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
adazmR2987Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR2991Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR3021Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR3037Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR3107Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR3122Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
adazmR3132Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
Gohir.A05G402700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghir_D04G001440.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GhM_A05G4756.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GbM_D04G0181.1Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1Gossypium barbadense
GR04G0173.t1Gossypium raimondii (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0Gossypium raimondii
EVM0001973.1Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
Gbic_04G001520.1Gossypium bickii (G1) genome HAU_v1Gossypium bickii
Gbar_A05G27626.1Gossypium barbadense (AD2) '3-79' genome HAU_v3.0Gossypium barbadense
Gstu04G023200.1Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
GhirA05G038520.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
GhUA48.A05G451600.1Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
rna-gnl|WGS_VKGE|Gotom.D04G016700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gh_A05G3771Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghicr24_D04G013000.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Glon_04G024020.1Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
EVM_prediction_Ga04G1992Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Gsto_04G021980.1Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
D5.v1.pred_00038499-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
Grot_04G001430.1Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1Gossypium rotundifolium
rna-gnl|WGS_VKGE|Gotom.A05G452900.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
GhUGA230.A05G450300.1Gossypium hirsutum (AD1) 'UGA230' genome HGS_v1.1Gossypium hirsutum
Gh_D04G012800.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Grai_04G023180.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
Gohir.D04G012800.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gohir.A05G402700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gheraf_04G024570.1Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
GhUA48.D04G015700.1Gossypium hirsutum (AD1) 'UA48' genome HGS_v1.1Gossypium hirsutum
Gorai.012G015100.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Gohir.A05G402700.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
Gbar_A05G040560.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Ghir_D04_G00172.t1Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
Gano_04G022910.1Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
Gh_D04G0120Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gher_04G001590.1Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
rna-gnl|WGS:VKDL|Gobar.D04G013700.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Garb_04G001610.1Gossypium arboreum (A2) 'SXY1' genome HAU_v1Gossypium arboreum
Ghicr24_A05G434000.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
rna-gnl|WGS:VKDL|Gobar.A05G422900.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GhCSX8308.D04G017900.1Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
GhirD04G002380.1Gossypium hirsutum (AD1) 'EM22' genome HAU v1.0Gossypium hirsutum
CotAD_42972Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GekA0501T459800.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
Gohir.D04G012800.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v3.1Gossypium hirsutum
Gh_A05G409600.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
GhM_D04G0163.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
EVM0029089.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Ghir_A05_G04580.t1Gossypium hirsutum (AD1) 'ZM113' T2T genome CRI_v1.0Gossypium hirsutum
Golon.004G015800-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
GhCSX8308.A05G443600.1Gossypium hirsutum (AD1) 'CSX8308' genome HGS_v1.1Gossypium hirsutum
Gohir.D04G012800.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
gene-E1A91_D04G015200v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-E1A91_A05G436300v1gene-E1A91_A05G436300v1_JGI-AD4_v1.1Gossypium mustelinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl-Gomus.A05G436300.1-exon1exon-gnl-Gomus.A05G436300.1-1_JGI-AD4_v1.1Gossypium mustelinumexon
rna-gnl-Gomus.A05G436300.1-exon2exon-gnl-Gomus.A05G436300.1-2_JGI-AD4_v1.1Gossypium mustelinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-gnl-Gomus.A05G436300.1-CDS1cds-TYJ38324.1_JGI-AD4_v1.1Gossypium mustelinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
gene-E1A91_A05G436300v1-mRNA1rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1-proteinGossypium mustelinumpolypeptide
rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1Gossypium mustelinumpolypeptide


Homology
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. NCBI nr
Match: gi|763808043|gb|KJB74945.1| (hypothetical protein B456_012G015100 [Gossypium raimondii] >gi|763808044|gb|KJB74946.1| hypothetical protein B456_012G015100 [Gossypium raimondii])

HSP 1 Score: 143.28 bits (360), Expect = 2.242e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
Query:    1 MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH 70
            MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH
Sbjct:    1 MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH 70          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. NCBI nr
Match: gi|1142826914|gb|AQK85001.1| (hypothetical protein ZEAMMB73_Zm00001d037857 [Zea mays])

HSP 1 Score: 58.5362 bits (140), Expect = 7.682e-10
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    8 DEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHF 69
            DE    R K  +  ++    C  V GS  RGV RCLFV+CYP++QC GLD+CRH HHH ++F
Sbjct:   13 DEAA--RAKETRCLALACCPCYYVLGSVARGVARCLFVACYPVIQCCGLDECRH-HHHASNF 71          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A0D2VUA5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G015100 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.883e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
Query:    1 MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH 70
            MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH
Sbjct:    1 MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH 70          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A1D6M160_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d037857 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.453e-10
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    8 DEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHF 69
            DE    R K  +  ++    C  V GS  RGV RCLFV+CYP++QC GLD+CRH HHH ++F
Sbjct:   13 DEAA--RAKETRCLALACCPCYYVLGSVARGVARCLFVACYPVIQCCGLDECRH-HHHASNF 71          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: K3ZBG2_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G286800v2 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.749e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHH-THF 69
            V GS +RG+GRCLFV+CYP++QC GLD+CRH H  H +HF
Sbjct:   33 VLGSVVRGIGRCLFVACYPMIQCCGLDECRHHHTSHLSHF 72          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A1E5WMD4_9POAL (Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000448 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 3.574e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHH-THF 69
            V GS +RG+GRCLFV+CYP++QC GLD+CRH H  H +HF
Sbjct:   33 VLGSVVRGIGRCLFVACYPMIQCCGLDECRHHHTSHLSHF 72          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A2S3HD53_9POAL (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_3G339900 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.031e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHH-THF 69
            V GS +RG+GRCLFV+CYP++QC GLD+CRH H  H +HF
Sbjct:   33 VLGSVVRGIGRCLFVACYPMIQCCGLDECRHHHTSHLSHF 72          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: I1HPM9_BRADI (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g44250v3 PE=4 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.635e-8
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0
Query:   27 YCVRVGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHF 69
            Y   V  S +RG+GRCLFV+CYP++QC GLD+C  RHHH+TH 
Sbjct:   24 YPCYVFSSFIRGIGRCLFVACYPVIQCCGLDEC--RHHHNTHL 64          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: J3M601_ORYBR (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.372e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHH-THF 69
            V  S +RG+GRCLFV+CYP +QC GLD+CRH H  H +HF
Sbjct:   34 VLSSVIRGIGRCLFVACYPAIQCCGLDECRHHHTTHLSHF 73          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A0E0L108_ORYPU (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.932e-8
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHF 69
            V  S +RG+GRCLFV+CYP +QC GLD+CRH HH  T F
Sbjct:   33 VLSSVIRGIGRCLFVACYPAIQCCGLDECRH-HHTTTQF 70          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: A0A2Z7BY24_9LAMI (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_16346 PE=4 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.501e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0
Query:   33 GSALRGVGRCLFVSCYPLLQCFGLDDCRHRHHHHTHFH 70
             S  R +GRC+FV CYP+LQC GLDDCRH  HHH HF+
Sbjct:   28 SSVFRVIGRCMFVVCYPVLQCCGLDDCRH--HHHNHFY 63          
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Match: I1PUE8_ORYGL (Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.677e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0
Query:   31 VGGSALRGVGRCLFVSCYPLLQCFGLDDCRHRH 63
            V  S +RG+GRCLFV+CYP +QC GLD+CRH H
Sbjct:   30 VLSSVIRGIGRCLFVACYPAIQCCGLDECRHHH 62          
The following BLAST results are available for this feature:
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. Araport11
Analysis Date: 2019-10-14 (BLASTP of JGI_v1.1 Gossypium mustelinum proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy Swiss-Prot
Analysis Date: 2019-10-14 (BLASTP of JGI_v1.1 Gossypium mustelinum proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. NCBI nr
Analysis Date: 2019-10-21 (BLASTP of JGI_v1.1 Gossypium mustelinum proteins vs NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|763808043|gb|KJB74945.1|2.242e-43100.00hypothetical protein B456_012G015100 [Gossypium ra... [more]
gi|1142826914|gb|AQK85001.1|7.682e-1050.00hypothetical protein ZEAMMB73_Zm00001d037857 [Zea ... [more]
back to top
BLAST of gene-E1A91_A05G436300v1-mRNA1 vs. ExPASy TrEMBL
Analysis Date: 2019-10-21 (BLASTP of JGI_v1.1 Gossypium mustelinum proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0D2VUA5_GOSRA1.883e-43100.00Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1D6M160_MAIZE6.453e-1050.00Uncharacterized protein OS=Zea mays OX=4577 GN=ZEA... [more]
K3ZBG2_SETIT2.749e-965.00Uncharacterized protein OS=Setaria italica OX=4555... [more]
A0A1E5WMD4_9POAL3.574e-965.00Uncharacterized protein OS=Dichanthelium oligosant... [more]
A0A2S3HD53_9POAL4.031e-965.00Uncharacterized protein OS=Panicum hallii OX=20600... [more]
I1HPM9_BRADI1.635e-860.47Uncharacterized protein OS=Brachypodium distachyon... [more]
J3M601_ORYBR2.372e-862.50Uncharacterized protein OS=Oryza brachyantha OX=45... [more]
A0A0E0L108_ORYPU4.932e-864.10Uncharacterized protein OS=Oryza punctata OX=4537 ... [more]
A0A2Z7BY24_9LAMI6.501e-865.79Uncharacterized protein OS=Dorcoceras hygrometricu... [more]
I1PUE8_ORYGL7.677e-866.67Uncharacterized protein OS=Oryza glaberrima OX=453... [more]
back to top
Sequences
The following sequences are available for this feature:

protein sequence of rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1

>rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1 ID=rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1; Name=rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1; organism=Gossypium mustelinum; type=polypeptide; length=70bp
MRGNDDMDEGGIQRRKSRKKGSIIKVYCVRVGGSALRGVGRCLFVSCYPL
LQCFGLDDCRHRHHHHTHFH
back to top

mRNA from alignment at CM017640.1:111966591..111967381+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1 ID=rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1; Name=gene-E1A91_A05G436300v1-mRNA1; organism=Gossypium mustelinum; type=mRNA; length=791bp; location=Sequence derived from: CM017640.1:111966591..111967381+ (Gossypium mustelinum
GCCTACGCGTATCTATCGGCTAATCAAAATTTCCAAAATGTTTTCTTGGT TTTCTTAATTCAGGAAAAAACCCATCAACGAATATTCTCTCATTCATTTC TCTGTATATATTTTGATGAATTTTAATGCTACAAGGTAAGTTGTGGAAAC CCTTTCTTTACATCTCTGGTATGCATGTTTTTTGGCCAGGTTTTAATGGT GGGAATCAAGTGATCAGTCAATGCAGATGACAGAGAATCTAAAGCTGAGT TCGTGTAGTTTGAGGTTCAAGTATTGCATCTACAATCAGTTGCCCCGTCT CCAAAGTAAAGCTTCCTTTGTATAAAAAGTACAGAGTGGATAAACATGAG GGGAAATGATGATATGGATGAAGGTGGGATTCAAAGAAGAAAGAGCAGAA AAAAGGGCTCAATAATCAAAGTGTATTGTGTGAGAGTGGGTGGTTCAGCG TTGAGAGGAGTTGGGAGATGCTTGTTTGTAAGTTGTTACCCACTCCTCCA ATGTTTTGGGTTGGATGATTGTAGGCATCGCCACCATCATCACACCCATT TCCATTGATCCCAAATTTCCCACAAAGGATAGGAGTAGGGGTTGTACAAA TTTGAATCTGAGACCAGGATCATTGGAAACTTGAACATAAGCCTTTTACC GGTCAATCCGTGATTCAGTATATCGTGTATCTTTTGAATTGTATGAAAGG AAATAAAGCTTTAGATTTCCATTTTTTTTTTCAAGTTTTCATGCATTTAA TGAGTCTTTGAATGATCATATTTTGATTCGGATATTCATCG
back to top

Coding sequence (CDS) from alignment at CM017640.1:111966591..111967381+

>rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1 ID=rna-gnl-Gomus.A05G436300.1_JGI-AD4_v1.1; Name=gene-E1A91_A05G436300v1-mRNA1; organism=Gossypium mustelinum; type=CDS; length=213bp; location=Sequence derived from: CM017640.1:111966591..111967381+ (Gossypium mustelinum
ATGAGGGGAAATGATGATATGGATGAAGGTGGGATTCAAAGAAGAAAGAG
CAGAAAAAAGGGCTCAATAATCAAAGTGTATTGTGTGAGAGTGGGTGGTT
CAGCGTTGAGAGGAGTTGGGAGATGCTTGTTTGTAAGTTGTTACCCACTC
CTCCAATGTTTTGGGTTGGATGATTGTAGGCATCGCCACCATCATCACAC
CCATTTCCATTGA
back to top