Ghicr24_D11G364800.1, Ghicr24_D11G364800.1_CRI-ZM24_v1 (mRNA) Gossypium hirsutum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ghicr24_D11G364800.1 vs. Araport11
Match: gnl|BL_ORD_ID|27819 (AT3G53630.1 | hypothetical protein | Chr3:19883986-19885568 FORWARD LENGTH=194 | 201606) HSP 1 Score: 228.794 bits (582), Expect = 1.239e-76 Identity = 123/201 (61.19%), Postives = 157/201 (78.11%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHR-NINAGSPRI 200
MSSF +N DNLL+QTL+GRLQIRPP + FL+QSL+DLL + + D + +T L +EE++LEKE+IRVI+SG++D LKPNSGQAV +N+HHIC+ FH++ SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERL K + N + ++ +K+E +EE++ NLGLRELIDGG D+ GRILHR NIN GS R+
Sbjct: 1 MSSFNGNSNIDNLLIQTLLGRLQIRPP----NSHFLSQSLDDLLFKSDDSDGDDDGEG-QTSLDREEARLEKELIRVIVSGRSDSLKPNSGQAVTVNEHHICVGFHEDEESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLPVK-LPNNRRVEKEKKKEMKEEEVENLGLRELIDGG-DAAPGRILHRNNINIGSSRV 194
BLAST of Ghicr24_D11G364800.1 vs. Araport11
Match: gnl|BL_ORD_ID|27820 (AT3G53630.2 | hypothetical protein | Chr3:19883986-19885192 FORWARD LENGTH=226 | 201606) HSP 1 Score: 228.794 bits (582), Expect = 3.649e-76 Identity = 123/200 (61.50%), Postives = 156/200 (78.00%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHR-NINAGSPR 199
MSSF +N DNLL+QTL+GRLQIRPP + FL+QSL+DLL + + D + +T L +EE++LEKE+IRVI+SG++D LKPNSGQAV +N+HHIC+ FH++ SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERL K + N + ++ +K+E +EE++ NLGLRELIDGG D+ GRILHR NIN GS R
Sbjct: 1 MSSFNGNSNIDNLLIQTLLGRLQIRPP----NSHFLSQSLDDLLFKSDDSDGDDDGEG-QTSLDREEARLEKELIRVIVSGRSDSLKPNSGQAVTVNEHHICVGFHEDEESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLPVK-LPNNRRVEKEKKKEMKEEEVENLGLRELIDGG-DAAPGRILHRNNINIGSSR 193
BLAST of Ghicr24_D11G364800.1 vs. Araport11
Match: gnl|BL_ORD_ID|32936 (AT4G18692.1 | hypothetical protein | Chr4:10284449-10284667 FORWARD LENGTH=72 | 201606) HSP 1 Score: 49.2914 bits (116), Expect = 3.884e-8 Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 137 YGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHR-NINAGSPRI 200
+GNYFERL K + N ++ +K+E +EE++ N GLRELIDGG D+ GRILHR NIN GS R
Sbjct: 4 FGNYFERLPVK-LPNNRHVEKEKKKEVKEEEVENWGLRELIDGG-DAAPGRILHRNNINIGSSRF 66
BLAST of Ghicr24_D11G364800.1 vs. Araport11
Match: gnl|BL_ORD_ID|27759 (AT3G53342.1 | hypothetical protein | Chr3:19777135-19777353 FORWARD LENGTH=72 | 201606) HSP 1 Score: 48.1358 bits (113), Expect = 8.924e-8 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
Query: 137 YGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHR-NINAGSPRI 200
+GNYFERL K + N ++ +K+E +EE++ N GLRELIDGG D GRILHR NIN GS R
Sbjct: 4 FGNYFERLPVK-LPNNRHVEKEKKKEVKEEEVENWGLRELIDGG-DVAPGRILHRNNINIGSSRF 66
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1029032162|ref|XP_016679866.1| (PREDICTED: uncharacterized protein LOC107898823 [Gossypium hirsutum]) HSP 1 Score: 411.379 bits (1056), Expect = 2.218e-145 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|823200435|ref|XP_012435213.1| (PREDICTED: uncharacterized protein LOC105761820 [Gossypium raimondii] >gi|763779452|gb|KJB46575.1| hypothetical protein B456_007G375300 [Gossypium raimondii]) HSP 1 Score: 409.838 bits (1052), Expect = 1.065e-144 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKE EKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEAEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1050609727|ref|XP_017627485.1| (PREDICTED: uncharacterized protein LOC108470632 [Gossypium arboreum]) HSP 1 Score: 406.757 bits (1044), Expect = 1.692e-143 Identity = 198/200 (99.00%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPP NTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVE+EEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPTNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEEEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|728851315|gb|KHG30758.1| (hypothetical protein F383_02650 [Gossypium arboreum]) HSP 1 Score: 403.675 bits (1036), Expect = 2.717e-142 Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPP NTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSG TDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVE+EEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPTNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGITDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEEEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1137193475|gb|OMO66200.1| (hypothetical protein CCACVL1_21279 [Corchorus capsularis]) HSP 1 Score: 318.161 bits (814), Expect = 2.084e-108 Identity = 166/204 (81.37%), Postives = 180/204 (88.24%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNE----EKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT+NFDNLLLQTLMGRLQIRPP N+ FLTQSLE+LLLDAANLSDSDSDD +KTQLAKEESKLEKEII++ILSGKTD LKPNSGQAV IN+HHICITFH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V ++ + E+EEEE+EK GNLGLRELIDGGADS GRILHRNINAGSPR
Sbjct: 1 MSSFTNTSNFDNLLLQTLMGRLQIRPP-NSSFKPFLTQSLEELLLDAANLSDSDSDDGNKTQLAKEESKLEKEIIKIILSGKTDSLKPNSGQAVTINEHHICITFHEEKGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEEEKEAEAAEEEEEEDEKAGNLGLRELIDGGADSAGGRILHRNINAGSPRF 203
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1137235016|gb|OMO97134.1| (hypothetical protein COLO4_14858 [Corchorus olitorius]) HSP 1 Score: 316.62 bits (810), Expect = 1.029e-107 Identity = 170/208 (81.73%), Postives = 181/208 (87.02%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEE--------KEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT+NFDNLLLQTLMGRLQIRPP N+ N LTQSLE+LLLDAANLSDSDSDD +KTQLAKEESKLEKEII++ILSGKTD LKPNSGQAV IN+HHICITFH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V + EKE E+EEEEEEK GNLGLRELIDGGADS GRILHRNINAGSPR
Sbjct: 1 MSSFTNTSNFDNLLLQTLMGRLQIRPP-NSTFNPSLTQSLEELLLDAANLSDSDSDDGNKTQLAKEESKLEKEIIKIILSGKTDSLKPNSGQAVTINEHHICITFHEEKGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEEEKEAEAAEKEEEEEEEEEEKAGNLGLRELIDGGADSAGGRILHRNINAGSPRF 207
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1204913931|ref|XP_021289603.1| (uncharacterized protein LOC110420567 [Herrania umbratica]) HSP 1 Score: 305.064 bits (780), Expect = 2.697e-103 Identity = 170/201 (84.58%), Postives = 180/201 (89.55%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKT-VVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT NFDNLLLQTLMGRLQIRPP N N LTQSLEDLLLDAANLSDSDS+D KTQLAKEESKLEKEIIR+ILSGKTDPLKPNSGQAV IN+HHICITFH+E SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V +EK+KE E EEEEEEK+GNLGLRELIDGG +SG GRILHRNINA SPR+
Sbjct: 1 MSSFTNTTNFDNLLLQTLMGRLQIRPPNN---NPVLTQSLEDLLLDAANLSDSDSEDNSKTQLAKEESKLEKEIIRIILSGKTDPLKPNSGQAVTINEHHICITFHEEKQSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEKDKEEEAEEEEEEKVGNLGLRELIDGGGESGGGRILHRNINANSPRV 198
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1269984295|ref|XP_022743111.1| (uncharacterized protein LOC111294174 [Durio zibethinus]) HSP 1 Score: 304.679 bits (779), Expect = 5.309e-103 Identity = 164/203 (80.79%), Postives = 178/203 (87.68%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNE---EKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT NFD+LLLQTLM RLQI P N + FLTQSLEDLL+DAANLSDSD DD +K QLAKEESKLEKEIIR+ILSGKTDPLKPNSGQAV INDHHIC+TF +E GSDYRVWEWHGHIMLFDEENG++PEYIYGNYFERLQGK +V EKEKEVE++EEE+EK+ NLGLRELIDG ADSG GRILHRNINAGSPR
Sbjct: 1 MSSFTNTTNFDSLLLQTLMRRLQICPNNNN-NSPFLTQSLEDLLVDAANLSDSDFDDTNKAQLAKEESKLEKEIIRIILSGKTDPLKPNSGQAVTINDHHICVTFQEEKGSDYRVWEWHGHIMLFDEENGFTPEYIYGNYFERLQGKPLVARVKEEKEKEVEEDEEEDEKVANLGLRELIDGAADSGGGRILHRNINAGSPRF 202
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|508715705|gb|EOY07602.1| (Uncharacterized protein TCM_021992 [Theobroma cacao]) HSP 1 Score: 300.056 bits (767), Expect = 2.292e-101 Identity = 164/200 (82.00%), Postives = 177/200 (88.50%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT N DNLLLQTLMGRLQIRPP N N FLTQSLEDLLLDAAN+SDSDS+D KTQLAKEESKLEKEIIR+IL GKTDPLKPNSGQAV IN+HHICITFH+E SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V ++++ KEEEEEEK+GNLGLRELIDGG +SG GRILHRNI+AGSPR
Sbjct: 1 MSSFTNTTNLDNLLLQTLMGRLQIRPPNN---NPFLTQSLEDLLLDAANVSDSDSEDNSKTQLAKEESKLEKEIIRIILLGKTDPLKPNSGQAVTINEHHICITFHEEKESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEKE---KEEEEEEKVGNLGLRELIDGGGESGGGRILHRNISAGSPRF 194
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Match: gi|1063507399|ref|XP_007027100.2| (PREDICTED: uncharacterized protein LOC18597811 [Theobroma cacao]) HSP 1 Score: 298.516 bits (763), Expect = 9.803e-101 Identity = 168/201 (83.58%), Postives = 178/201 (88.56%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKT-VVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSS TNT N DNLLLQTLMGRLQIRPP N N FLTQSLEDLLLDAAN+SDSDS+D KTQLAKEESKLEKEIIR+IL GKTDPLKPNSGQAV IN+HHICITFH+E SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V +EKEKE E EEEEEEK+GNLGLRELIDGG +SG GRILHRNI+AGSPR
Sbjct: 1 MSSLTNTTNLDNLLLQTLMGRLQIRPPNN---NPFLTQSLEDLLLDAANVSDSDSEDNSKTQLAKEESKLEKEIIRIILLGKTDPLKPNSGQAVTINEHHICITFHEEKESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEKEKEEEAEEEEEEKVGNLGLRELIDGGGESGGGRILHRNISAGSPRF 198
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A1U8IP23_GOSHI (uncharacterized protein LOC107898823 OS=Gossypium hirsutum OX=3635 GN=LOC107898823 PE=4 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 1.863e-145 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A0D2TT85_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G375300 PE=4 SV=1) HSP 1 Score: 409.838 bits (1052), Expect = 8.948e-145 Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKE EKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEAEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A0B0PWB8_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_02650 PE=4 SV=1) HSP 1 Score: 403.675 bits (1036), Expect = 2.282e-142 Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNTNNFDNLLLQTLMGRLQIRPP NTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSG TDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVE+EEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI
Sbjct: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPTNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGITDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEEEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A1R3H7G0_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21279 PE=4 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 1.751e-108 Identity = 166/204 (81.37%), Postives = 180/204 (88.24%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNE----EKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT+NFDNLLLQTLMGRLQIRPP N+ FLTQSLE+LLLDAANLSDSDSDD +KTQLAKEESKLEKEII++ILSGKTD LKPNSGQAV IN+HHICITFH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V ++ + E+EEEE+EK GNLGLRELIDGGADS GRILHRNINAGSPR
Sbjct: 1 MSSFTNTSNFDNLLLQTLMGRLQIRPP-NSSFKPFLTQSLEELLLDAANLSDSDSDDGNKTQLAKEESKLEKEIIKIILSGKTDSLKPNSGQAVTINEHHICITFHEEKGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEEEKEAEAAEEEEEEDEKAGNLGLRELIDGGADSAGGRILHRNINAGSPRF 203
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A1R3JQR1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14858 PE=4 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 8.644e-108 Identity = 170/208 (81.73%), Postives = 181/208 (87.02%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEE--------KEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT+NFDNLLLQTLMGRLQIRPP N+ N LTQSLE+LLLDAANLSDSDSDD +KTQLAKEESKLEKEII++ILSGKTD LKPNSGQAV IN+HHICITFH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V + EKE E+EEEEEEK GNLGLRELIDGGADS GRILHRNINAGSPR
Sbjct: 1 MSSFTNTSNFDNLLLQTLMGRLQIRPP-NSTFNPSLTQSLEELLLDAANLSDSDSDDGNKTQLAKEESKLEKEIIKIILSGKTDSLKPNSGQAVTINEHHICITFHEEKGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEEEKEAEAAEKEEEEEEEEEEKAGNLGLRELIDGGADSAGGRILHRNINAGSPRF 207
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A061ET79_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021992 PE=4 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 1.926e-101 Identity = 164/200 (82.00%), Postives = 177/200 (88.50%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
MSSFTNT N DNLLLQTLMGRLQIRPP N N FLTQSLEDLLLDAAN+SDSDS+D KTQLAKEESKLEKEIIR+IL GKTDPLKPNSGQAV IN+HHICITFH+E SDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK V ++++ KEEEEEEK+GNLGLRELIDGG +SG GRILHRNI+AGSPR
Sbjct: 1 MSSFTNTTNLDNLLLQTLMGRLQIRPPNN---NPFLTQSLEDLLLDAANVSDSDSEDNSKTQLAKEESKLEKEIIRIILLGKTDPLKPNSGQAVTINEHHICITFHEEKESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEKE---KEEEEEEKVGNLGLRELIDGGGESGGGRILHRNISAGSPRF 194
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: M5W073_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G250000 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 4.321e-100 Identity = 154/204 (75.49%), Postives = 173/204 (84.80%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLS-DSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEK---EVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
M+SFTNT NFDNL+LQTLMGRLQIRPP N NSFL+Q+LE+LL DAANLS D D DD +KTQLAKEESKLEK+IIRVILSGKTD LKPNSGQAV I +HHIC+ FH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERL GK + E ++EEE++E++GNLGLRELIDGG DSG GRILHRNINAGS R+
Sbjct: 1 MNSFTNTTNFDNLMLQTLMGRLQIRPPTN---NSFLSQTLEELLFDAANLSGDEDDDDENKTQLAKEESKLEKDIIRVILSGKTDSLKPNSGQAVTIGEHHICVGFHEETGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLIGKARTGSSGVRVEEEAKEEEEDKEQVGNLGLRELIDGG-DSGQGRILHRNINAGSSRV 200
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A0D2RXX3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G175400 PE=4 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.297e-94 Identity = 159/202 (78.71%), Postives = 175/202 (86.63%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGA--DSGSGRILHRNINAGSPRI 200
M+SF+NT NFDNLLLQTL+GRLQIRP T T SFLTQSLED+LLDAAN SDSDSDD +KTQLAKEESKLEKEIIR+ILSGK DPLKPNSGQAV INDHHICIT H+E GSDYRVWEWHGHIMLFDEENG++PEYIYGNYFERLQGK +V+ E+E+EEEEK+ NLGLRELIDG A D+ GRILHRNI+A SPRI
Sbjct: 1 MNSFSNTTNFDNLLLQTLLGRLQIRP---TTTTSFLTQSLEDILLDAANFSDSDSDDTNKTQLAKEESKLEKEIIRIILSGKIDPLKPNSGQAVTINDHHICITSHKEKGSDYRVWEWHGHIMLFDEENGFTPEYIYGNYFERLQGKPLVS-----RAEEEKEEEEKVVNLGLRELIDGDAEPDTTGGRILHRNISASSPRI 194
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A2P4L149_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_40857 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 7.295e-94 Identity = 162/209 (77.51%), Postives = 174/209 (83.25%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTIT-NSFLTQSLEDLLLDAANLSDSDSDDA-------DKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTV-VNEEKEKEVEKEEEEEEKIGNLGLRELIDGGADSGSGRILHRNINAGSPRI 200
M SFTNT NFDNLLLQTLMGRLQIRPP T T N F +QSLEDLL +AAN SD + DD KTQLAKEESKLEKEI+RVILSGKTD LKPNSGQAV I +HHIC+ FH+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERL K+ V+EEKEKE EKEEE+EEK+GNLGLRELIDGG DSG RILHRNINAGSPR
Sbjct: 1 MGSFTNTTNFDNLLLQTLMGRLQIRPPTATTTANPFHSQSLEDLLFEAANFSDDNDDDEDDGENGNSKTQLAKEESKLEKEIVRVILSGKTDSLKPNSGQAVTIGEHHICVGFHEETGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLLVKSRGVDEEKEKEKEKEEEKEEKVGNLGLRELIDGG-DSGGARILHRNINAGSPRF 208
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Match: A0A1U8I4K4_GOSHI (uncharacterized protein LOC107891028 OS=Gossypium hirsutum OX=3635 GN=LOC107891028 PE=4 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 5.095e-93 Identity = 157/202 (77.72%), Postives = 171/202 (84.65%), Query Frame = 0
Query: 1 MSSFTNTNNFDNLLLQTLMGRLQIRPPPNTITNSFLTQSLEDLLLDAANLSDSDSDDADKTQLAKEESKLEKEIIRVILSGKTDPLKPNSGQAVNINDHHICITFHQENGSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKTVVNEEKEKEVEKEEEEEEKIGNLGLRELIDGGA--DSGSGRILHRNINAGSPRI 200
MSSF+NT NFDNLLLQTL+GRLQIRP T T SFLTQSLED+LLDAAN SDSDSDD +KTQLAKEESKLEK IIR ILSGK DPL+PNSGQ V INDHHICIT H+E GSDYRVWEWHGHIMLFDEENGY+PEYIYGNYFERLQGK +V+ E+E+EEEEK+ NLGLRELIDG A D+ GRILHRNI+A SPR
Sbjct: 1 MSSFSNTTNFDNLLLQTLLGRLQIRP---TTTTSFLTQSLEDILLDAANFSDSDSDDTNKTQLAKEESKLEKAIIRTILSGKIDPLRPNSGQVVTINDHHICITSHEEKGSDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPLVS-----RAEEEKEEEEKVVNLGLRELIDGDAEPDTTGGRILHRNISASSPRF 194 The following BLAST results are available for this feature:
BLAST of Ghicr24_D11G364800.1 vs. ExPASy Swiss-Prot
Analysis Date: 2019-09-19 (BLASTP of ZM24-CRI v1.0.a1 Gossypium hirsutum proteins vs UniProt Swissprot) Total hits: 0
BLAST of Ghicr24_D11G364800.1 vs. Araport11
Analysis Date: 2019-09-19 (BLASTP of ZM24-CRI v1.0.a1 Gossypium hirsutum proteins vs arabidopsis Araport11) Total hits: 4
BLAST of Ghicr24_D11G364800.1 vs. NCBI nr
Analysis Date: 2019-09-19 (BLASTP of ZM24-CRI v1.0.a1 Gossypium hirsutum proteins vs NCBI nr) Total hits: 10
BLAST of Ghicr24_D11G364800.1 vs. ExPASy TrEMBL
Analysis Date: 2019-09-26 (BLASTP of ZM24-CRI v1.0.a1 Gossypium hirsutum proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for ZM24-CRI v1.0.a1 Gossypium hirsutum proteins
Date Performed: 2019-09-18
Sequences
The
following sequences are available for this feature:
protein sequence of Ghicr24_D11G364800.1_CRI-ZM24_v1 >Ghicr24_D11G364800.1_CRI-ZM24_v1 ID=Ghicr24_D11G364800.1_CRI-ZM24_v1; Name=Ghicr24_D11G364800.1_CRI-ZM24_v1; organism=Gossypium hirsutum; type=polypeptide; length=201bpback to top mRNA from alignment at D11:68920622..68923044+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ghicr24_D11G364800.1_CRI-ZM24_v1 ID=Ghicr24_D11G364800.1_CRI-ZM24_v1; Name=Ghicr24_D11G364800.1; organism=Gossypium hirsutum; type=mRNA; length=2423bp; location=Sequence derived from: D11:68920622..68923044+ (Gossypium hirsutumback to top Coding sequence (CDS) from alignment at D11:68920622..68923044+ >Ghicr24_D11G364800.1_CRI-ZM24_v1 ID=Ghicr24_D11G364800.1_CRI-ZM24_v1; Name=Ghicr24_D11G364800.1; organism=Gossypium hirsutum; type=CDS; length=603bp; location=Sequence derived from: D11:68920622..68923044+ (Gossypium hirsutumback to top |