CotAD_45676, CotAD_45676_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameCotAD_45676
Unique NameCotAD_45676_BGI-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length255
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At_chr6chromosomeAt_chr6:53542145..53542399 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
hbhbR0168Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnR0183Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0202Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0206Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0230Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0252Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0268Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR0303Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbrjR0118Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hbhjR0185Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR0206Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR0211Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR0239Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR0271Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR0309Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
gbhbL0002Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL1115Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL1658Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL2921Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL5359Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghhbL0002Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL1077Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL2851Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL5208Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
achbL1284Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL2839Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbhzR0157Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0177Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0182Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0204Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0271Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzhbL0003Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL1151Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL1719Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL3016Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL5492Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gkhbL0005Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gkhbL0584Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gkhbL1914Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gtbhbL0005Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL1514Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL2657Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
ghzhbL0001Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL1112Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL1616Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL2866Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL5264Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthbL0004Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthbL1137Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthbL1667Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthbL2941Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthbL5395Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adhbL0003Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL1131Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL1684Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL2985Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL4301Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL5436Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hbhgsR0128Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0144Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0149Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0168Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0227Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbtoR0134Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0147Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0151Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0174Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0209Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0234Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdhbL0003Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1142Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1695Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL3005Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL5486Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnhbL0002Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL1520Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL2649Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dthbL0161Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL0303Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL2002Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
hbhwR0095Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0109Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0127Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0169Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awhbL1189Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL2717Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
hbuhR0139Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0164Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0225Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
dtthbL0160Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtthbL0718Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
dtthbL1243Gossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
gtihbL0636Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtihbL1855Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
dsihbL0325Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihbL0725Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dsihbL1505Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
dqihbL0004Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqihbL0689Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
dqihbL1128Gossypium lobatum (D7) genome ISU_v1Gossypium lobatum
hbndmR0162Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0180Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0189Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0211Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0276Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
adbhbL0006Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL1099Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL1612Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL2862Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL5176Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
hbjmbR0151Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0168Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0176Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0198Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0264Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
adyhbL0002Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL1134Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL1673Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL2979Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL5463Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
GB_D09G1544Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gar09G17560Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
Kirkii_Juiced.00g242690.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS_VKGE|Gotom.D09G165700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Ghe09G18330Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
rna-gnl|WGS:JABEZX|Golob_00016798-RAGossypium lobatum (D7) genome ISU_v1Gossypium lobatum
rna-gnl|WGS:VKDL|Gobar.A09G145500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rna-gnl|WGS:JABEZY|Gogos_00019776-RAGossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
Gothu.00040524-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
Golon.009G165700-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Gorai.006G157600.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rna-gnl|WGS_VKGE|Gotom.A09G163100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rna-gnl|WGS:VKDL|Gobar.D09G154700.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
EVM_prediction_Ga09G1568Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
gene-E1A91_D09G160200v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
GB_A09G1662Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
EVM0011019.1Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
Gbar_A09G014720.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
TURN.09g248490.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gene-E1A91_A09G147600v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS:JABFAD|Gohar_00020782-RAGossypium harknessii (D2-2) genome ISU_v1Gossypium harknessii
rna-gnl|WGS_VKGI|Godar.A09G167800.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gohir.A09G136000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gohir.D09G137300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Gh_A09G156800.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gh_D09G151700.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
maker-At_09_GB713_Mikado_sloci-g-76.438-mRNA-1Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
CotAD_02892Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gohir.D09G137300.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GH_A09G1540Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GH_D09G1525Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Ghir_D09G014490.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
D09G17140.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gh_A09G2452Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghir_A09G014640.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
GhM_A09G1732.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
GhM_D09G1669.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
A09G19080.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GhirPA0901T141500.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Ghicr24_A09G157100.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
Gohir.A09G136000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CotAD_45676_BGI-AD1_v1.0-CDS-At_chr6_BGI-AD1_v1.0-1448072452:53542145..53542399CotAD_45676_BGI-AD1_v1.0-CDS-At_chr6_BGI-AD1_v1.0-1448072452:53542145..53542399Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CotAD_45676CotAD_45676_BGI-AD1_v1.0-proteinGossypium hirsutumpolypeptide
CotAD_45676_BGI-AD1_v1.0CotAD_45676_BGI-AD1_v1.0Gossypium hirsutumpolypeptide


Homology
BLAST of CotAD_45676 vs. Cacao Genome Database
Match: pacid=27424143 (transcript=Thecc1EG022468t1 locus=Thecc1EG022468 ID=Thecc1EG022468t1.CGDv1.1 annot-version=v1.1)

HSP 1 Score: 60.077 bits (144), Expect = 4.202e-10
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 MKNHQSS--SVLASATKYCSQVGLIKTNXXXXXXXXXXXXXXXDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
            M+NH +S  +   SA+   SQV L + N                    + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct:    1 MRNHPNSGQTNFESASNLRSQVALNRINKARSGGQIGLNGGFNAS---KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78          
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match: A0A2P5YBE3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07708 PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 8.878e-53
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
Sbjct:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84          
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match: A0A2P5SAL4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06882 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.388e-49
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            M+NHQSSSVL SATKYCSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct:    1 MRNHQSSSVLVSATKYCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 84          
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match: A0A0D2SYM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157600 PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.530e-47
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            M+NHQSSSVL SAT  CSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct:   18 MRNHQSSSVLVSATNNCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 101          
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match: A0A061EUR4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022468 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.635e-14
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 0
Query:    1 MKNHQSS--SVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
            M+NH +S  +   SA+   SQV L + NK   S GQ G  GG +    + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct:    1 MRNHPNSGQTNFESASNLRSQVALNRINKA-RSGGQIGLNGGFNAS--KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78          
BLAST of CotAD_45676 vs. NCBI nr
Match: gi|1347716350|gb|PPS12920.1| (hypothetical protein GOBAR_AA07708 [Gossypium barbadense])

HSP 1 Score: 167.933 bits (424), Expect = 1.057e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
Sbjct:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84          
BLAST of CotAD_45676 vs. NCBI nr
Match: gi|1344123431|gb|PPD96095.1| (hypothetical protein GOBAR_DD06882 [Gossypium barbadense])

HSP 1 Score: 157.918 bits (398), Expect = 8.795e-49
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            M+NHQSSSVL SATKYCSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct:    1 MRNHQSSSVLVSATKYCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 84          
BLAST of CotAD_45676 vs. NCBI nr
Match: gi|763769185|gb|KJB36400.1| (hypothetical protein B456_006G157600 [Gossypium raimondii])

HSP 1 Score: 154.066 bits (388), Expect = 5.393e-47
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
            M+NHQSSSVL SAT  CSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct:   18 MRNHQSSSVLVSATNNCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 101          
BLAST of CotAD_45676 vs. NCBI nr
Match: gi|508716235|gb|EOY08132.1| (Uncharacterized protein TCM_022468 [Theobroma cacao])

HSP 1 Score: 70.0922 bits (170), Expect = 5.517e-14
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 0
Query:    1 MKNHQSS--SVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
            M+NH +S  +   SA+   SQV L + NK   S GQ G  GG +    + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct:    1 MRNHPNSGQTNFESASNLRSQVALNRINKA-RSGGQIGLNGGFNAS--KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78          
The following BLAST results are available for this feature:
BLAST of CotAD_45676 vs. Cacao Genome Database
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Cacao)
Total hits: 1
Match NameE-valueIdentityDescription
pacid=274241434.202e-1047.56transcript=Thecc1EG022468t1 locus=Thecc1EG022468 I... [more]
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BLAST of CotAD_45676 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2P5YBE3_GOSBA8.878e-53100.00Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A2P5SAL4_GOSBA7.388e-4992.86Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0D2SYM9_GOSRA4.530e-4790.48Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A061EUR4_THECC4.635e-1456.10Uncharacterized protein OS=Theobroma cacao OX=3641... [more]
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BLAST of CotAD_45676 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|1347716350|gb|PPS12920.1|1.057e-52100.00hypothetical protein GOBAR_AA07708 [Gossypium barb... [more]
gi|1344123431|gb|PPD96095.1|8.795e-4992.86hypothetical protein GOBAR_DD06882 [Gossypium barb... [more]
gi|763769185|gb|KJB36400.1|5.393e-4790.48hypothetical protein B456_006G157600 [Gossypium ra... [more]
gi|508716235|gb|EOY08132.1|5.517e-1456.10Uncharacterized protein TCM_022468 [Theobroma caca... [more]
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BLAST of CotAD_45676 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CotAD_45676 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=mRNA; length=255bp
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG
CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC
AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT
CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG
AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT
CCTAA
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protein sequence of CotAD_45676_BGI-AD1_v1.0

>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=84bp
MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGF
QGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
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mRNA from alignment at At_chr6:53542145..53542399+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=mRNA; length=255bp; location=Sequence derived from: At_chr6:53542145..53542399+ (Gossypium hirsutum
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT CCTAA
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Coding sequence (CDS) from alignment at At_chr6:53542145..53542399+

>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=CDS; length=255bp; location=Sequence derived from: At_chr6:53542145..53542399+ (Gossypium hirsutum
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG
CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC
AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT
CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG
AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT
CCTAA
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