Homology
BLAST of CotAD_45676 vs. Cacao Genome Database
Match:
pacid=27424143 (transcript=Thecc1EG022468t1 locus=Thecc1EG022468 ID=Thecc1EG022468t1.CGDv1.1 annot-version=v1.1)
HSP 1 Score: 60.077 bits (144), Expect = 4.202e-10
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 1 MKNHQSS--SVLASATKYCSQVGLIKTNXXXXXXXXXXXXXXXDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
M+NH +S + SA+ SQV L + N + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct: 1 MRNHPNSGQTNFESASNLRSQVALNRINKARSGGQIGLNGGFNAS---KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match:
A0A2P5YBE3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07708 PE=4 SV=1)
HSP 1 Score: 167.933 bits (424), Expect = 8.878e-53
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
Sbjct: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match:
A0A2P5SAL4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06882 PE=4 SV=1)
HSP 1 Score: 157.918 bits (398), Expect = 7.388e-49
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
M+NHQSSSVL SATKYCSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct: 1 MRNHQSSSVLVSATKYCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 84
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match:
A0A0D2SYM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157600 PE=4 SV=1)
HSP 1 Score: 154.066 bits (388), Expect = 4.530e-47
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
M+NHQSSSVL SAT CSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct: 18 MRNHQSSSVLVSATNNCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 101
BLAST of CotAD_45676 vs. ExPASy TrEMBL
Match:
A0A061EUR4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_022468 PE=4 SV=1)
HSP 1 Score: 70.0922 bits (170), Expect = 4.635e-14
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 0
Query: 1 MKNHQSS--SVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
M+NH +S + SA+ SQV L + NK S GQ G GG + + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct: 1 MRNHPNSGQTNFESASNLRSQVALNRINKA-RSGGQIGLNGGFNAS--KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78
BLAST of CotAD_45676 vs. NCBI nr
Match:
gi|1347716350|gb|PPS12920.1| (hypothetical protein GOBAR_AA07708 [Gossypium barbadense])
HSP 1 Score: 167.933 bits (424), Expect = 1.057e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
Sbjct: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
BLAST of CotAD_45676 vs. NCBI nr
Match:
gi|1344123431|gb|PPD96095.1| (hypothetical protein GOBAR_DD06882 [Gossypium barbadense])
HSP 1 Score: 157.918 bits (398), Expect = 8.795e-49
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
M+NHQSSSVL SATKYCSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct: 1 MRNHQSSSVLVSATKYCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 84
BLAST of CotAD_45676 vs. NCBI nr
Match:
gi|763769185|gb|KJB36400.1| (hypothetical protein B456_006G157600 [Gossypium raimondii])
HSP 1 Score: 154.066 bits (388), Expect = 5.393e-47
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 1 MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS 84
M+NHQSSSVL SAT CSQVGLI+TNKGGISIGQKGSKGGSDPIILRLG QGEVEGSTPKLQRFKIRTV TGQVVVKDE+TSKS
Sbjct: 18 MRNHQSSSVLVSATNNCSQVGLIRTNKGGISIGQKGSKGGSDPIILRLGIQGEVEGSTPKLQRFKIRTVETGQVVVKDEETSKS 101
BLAST of CotAD_45676 vs. NCBI nr
Match:
gi|508716235|gb|EOY08132.1| (Uncharacterized protein TCM_022468 [Theobroma cacao])
HSP 1 Score: 70.0922 bits (170), Expect = 5.517e-14
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 0
Query: 1 MKNHQSS--SVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGFQGEVEGSTPKLQRFKIRTVATGQVVVKDED 80
M+NH +S + SA+ SQV L + NK S GQ G GG + + GFQGEVEGSTPKL+RFKIRTV TGQ VVKDE+
Sbjct: 1 MRNHPNSGQTNFESASNLRSQVALNRINKA-RSGGQIGLNGGFNAS--KSGFQGEVEGSTPKLERFKIRTVETGQ-VVKDEE 78
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=mRNA; length=255bp
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG
CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC
AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT
CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG
AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT
CCTAA
back to topprotein sequence of CotAD_45676_BGI-AD1_v1.0
>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=84bp
MKNHQSSSVLASATKYCSQVGLIKTNKGGISIGQKGSKGGSDPIILRLGF
QGEVEGSTPKLQRFKIRTVATGQVVVKDEDTSKS
back to topmRNA from alignment at At_chr6:53542145..53542399+
Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=mRNA; length=255bp; location=Sequence derived from: At_chr6:53542145..53542399+ (Gossypium hirsutum
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG
CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC
AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT
CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG
AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT
CCTAA
back to topCoding sequence (CDS) from alignment at At_chr6:53542145..53542399+
>CotAD_45676_BGI-AD1_v1.0 ID=CotAD_45676_BGI-AD1_v1.0; Name=CotAD_45676; organism=Gossypium hirsutum; type=CDS; length=255bp; location=Sequence derived from: At_chr6:53542145..53542399+ (Gossypium hirsutum
ATGAAAAATCATCAAAGCTCATCGGTTTTGGCGTCGGCCACCAAATACTG
CAGCCAAGTTGGTTTGATAAAAACAAATAAAGGCGGAATTAGCATAGGGC
AAAAAGGTTCCAAGGGAGGGTCAGATCCAATTATATTGAGGTTGGGATTT
CAGGGAGAAGTGGAGGGATCAACGCCCAAGCTCCAGCGGTTTAAGATCAG
AACTGTCGCAACAGGTCAGGTTGTTGTGAAGGATGAGGACACAAGTAAAT
CCTAA
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