CotAD_17715, CotAD_17715_BGI-AD1_v1.0 (mRNA) Gossypium hirsutum

Transcript Overview
NameCotAD_17715
Unique NameCotAD_17715_BGI-AD1_v1.0
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At_chr10chromosomeAt_chr10:70008517..70008882 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abhbL0473Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhbL1458Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhbL3263Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abhbL3522Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
bhhbL0893Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL2237Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL2253Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL3517Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL3762Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
bhhbL5346Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
hbhbL1144Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhbR1709Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnR2474Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2479Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2492Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2540Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2553Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2558Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2570Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhnR2606Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hbhjR2563Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2571Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2583Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2628Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2631Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2642Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2647Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2660Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2702Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hbhjR2706Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
gbhbL0900Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL1822Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL2131Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL2471Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL2699Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL3813Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL4373Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL4385Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL4707Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL4909Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhbL5118Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghhbL0868Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL1761Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL2074Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL2424Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL2632Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL3714Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL4257Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL4595Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL4790Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhbL5002Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
achbL0226Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL1008Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL1827Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL2174Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL2382Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
achbL2601Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hbhzR0006Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0011Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0023Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0074Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0087Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0091Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0103Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hbhzR0148Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzhbL0922Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL1882Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL2216Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL2580Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL2792Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL3927Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL4486Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL4842Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL5045Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhbL5261Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gtbhbL0184Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL0912Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL1681Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL2045Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL2212Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
gtbhbL2429Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
grbhbL0878Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbhbL1611Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbhbL1940Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbhbL2148Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbhbL2362Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghzhbL0890Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL1779Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL2104Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL2449Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL2658Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL3040Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL3728Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL4271Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL4637Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL4839Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhbL5049Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
gauhbL0697Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gauhbL0703Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gauhbL1511Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gauhbL1645Gossypium australe (G2) genome CRI_v1.1Gossypium australe
gauhbL1795Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adhbL0906Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL1848Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL2185Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL2542Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL2764Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL3159Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL3882Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL4446Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL4460Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL4799Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL4991Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adhbL5207Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hbhgsR0004Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0008Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0015Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0071Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0072Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbhgsR0080Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hbtoR0006Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0011Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0018Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0063Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0072Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0075Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0085Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hbtoR0130Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdhbL0178Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL0919Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL1862Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL2200Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL2560Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL2777Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL3173Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL3908Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL4474Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL4489Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL4834Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL5033Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhbL5253Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnhbL0918Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL1681Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL2017Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL2214Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnhbL2426Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dthbL0604Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL1115Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL1122Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL1438Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dthbL1991Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
hbhwR0005Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0012Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0018Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0033Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0034Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hbhwR0085Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awhbL0212Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL0956Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL1708Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL1721Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL2055Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL2262Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awhbL2480Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
hbtwR0001Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0008Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0013Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0023Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0074Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0087Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0091Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbtwR0106Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hbuhR0004Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0007Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0013Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0056Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0068Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0071Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hbuhR0080Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
gtihbL0431Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtihbL0801Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
gtihbL1404Gossypium thurberi (D1-5) genome CRI_v1Gossypium thurberi
hbndmR0007Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0012Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0024Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0076Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0089Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0093Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0107Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hbndmR0153Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
barhbL0861Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL1754Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL2105Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL2422Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL2634Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL3026Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL3706Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL4252Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL4589Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL4780Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhbL4992Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
adbhbL0883Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL1759Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL2110Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL2424Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL2630Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL3016Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL3697Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL4235Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL4567Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL4758Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
adbhbL4967Gossypium hirsutum (AD1) 'B713' genome NSF_v1Gossypium hirsutum
hbjmbR0007Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0012Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0025Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0068Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0084Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0087Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0097Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbjmbR0143Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hbpscR0010Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0016Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0056Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0074Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0085Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0089Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0124Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hbpscR0145Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adyhbL0904Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL1858Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL2184Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL2532Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL2750Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL3155Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL3891Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL4447Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL4806Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL5014Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhbL5239Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
hbhpfR0006Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0011Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0020Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0064Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0079Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0082Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0090Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hbhpfR0140Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
gene-EPI10_010846-mRNA1Gossypium australe (G2) genome CRI_v1.1Gossypium australe
Gar06G06860Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS_VKGI|Godar.A06G068200.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Cotton_A_17427Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
EVM_prediction_Ga06G0571Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
rna-gnl|WGS_VKGE|Gotom.A06G066700.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gbscaffold15989.3.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
Ghe06G06790Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gene-E1A91_D06G064600v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
A06G06660.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Gohir.A06G055600.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
GhirPA0601T059200.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_D06G00622_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Ghi_A06G02981Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
GhM_A06G0655.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Gh_D06G0524Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
GH_A06G0602Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhirPD0601T055100.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_A06G00617_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
Ghir_A06G005840.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CotAD_17715_BGI-AD1_v1.0-CDS-At_chr10_BGI-AD1_v1.0-1448072452:70008517..70008882CotAD_17715_BGI-AD1_v1.0-CDS-At_chr10_BGI-AD1_v1.0-1448072452:70008517..70008882Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CotAD_17715CotAD_17715_BGI-AD1_v1.0-proteinGossypium hirsutumpolypeptide
CotAD_17715_BGI-AD1_v1.0CotAD_17715_BGI-AD1_v1.0Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|1347706454|gb|PPS04865.1| (hypothetical protein GOBAR_AA15798 [Gossypium barbadense])

HSP 1 Score: 237.654 bits (605), Expect = 3.393e-79
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKH+ADLGS IQDGRKDKPFPSDSKRQCRSLA TDQAREVDSFLGFQSVFSFL
Sbjct:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHLADLGSSIQDGRKDKPFPSDSKRQCRSLASTDQAREVDSFLGFQSVFSFL 121
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253392|ref|XP_012459321.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X8 [Gossypium raimondii])

HSP 1 Score: 209.149 bits (531), Expect = 2.120e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  853 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 973
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|1028938319|ref|XP_016712346.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 isoform X3 [Gossypium hirsutum])

HSP 1 Score: 209.149 bits (531), Expect = 2.186e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  912 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1032
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253390|ref|XP_012459320.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X7 [Gossypium raimondii])

HSP 1 Score: 209.149 bits (531), Expect = 2.371e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  907 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1027
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|1344108607|gb|PPD82339.1| (hypothetical protein GOBAR_DD20727 [Gossypium barbadense])

HSP 1 Score: 209.149 bits (531), Expect = 3.162e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  960 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1080
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253384|ref|XP_012459317.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X4 [Gossypium raimondii])

HSP 1 Score: 208.379 bits (529), Expect = 5.651e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1092 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1212
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253394|ref|XP_012459322.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X9 [Gossypium raimondii])

HSP 1 Score: 208.379 bits (529), Expect = 5.683e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1086 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1206
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|1028938317|ref|XP_016712345.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH17 isoform X2 [Gossypium hirsutum])

HSP 1 Score: 208.379 bits (529), Expect = 5.895e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1097 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1217
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253378|ref|XP_012459314.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X1 [Gossypium raimondii] >gi|823253380|ref|XP_012459315.1| PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X2 [Gossypium raimondii])

HSP 1 Score: 208.379 bits (529), Expect = 6.054e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1093 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1213
[Close]
BLAST of CotAD_17715 vs. NCBI nr
Match: gi|823253386|ref|XP_012459318.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog isoform X5 [Gossypium raimondii])

HSP 1 Score: 208.379 bits (529), Expect = 6.148e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1087 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1207
[Close]
BLAST of CotAD_17715 vs. Vitis vinifera
Match: pacid=17838359 (transcript=GSVIVT01032433001 locus=GSVIVG01032433001 ID=GSVIVT01032433001.Genoscope12X annot-version=Genoscope.12X)

HSP 1 Score: 78.1814 bits (191), Expect = 8.964e-16
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            +VIS+ EP ++ +++   + G K   N++  S+   +G L   P+VSS +T  +   + SF +++VKN+   AD G  +++ RK    P+ SK QC   A   + REVDSFLGF+SVFSFL
Sbjct: 1152 VVISDSEPKKMEKESHHVREGAKMDPNIISGSTCSTHGSLDPLPEVSSIQTDPT--HIPSFYVARVKNNVQNADPGMCVKNIRKRSLSPNGSKGQCCPAATPGKIREVDSFLGFKSVFSFL 1270
[Close]
BLAST of CotAD_17715 vs. Cacao Genome Database
Match: pacid=27454749 (transcript=Thecc1EG016933t1 locus=Thecc1EG016933 ID=Thecc1EG016933t1.CGDv1.1 annot-version=v1.1)

HSP 1 Score: 156.377 bits (394), Expect = 4.460e-39
Identity = 83/121 (68.60%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISE EPGEVN D C TK GTKAK+NV   SS GANG  AVSPKVSST  G SS +ML+FDIS VKNSK +ADLGS I+DG K+   P +SKR C S+A T +  EVDSFLGFQSVFSFL
Sbjct: 1132 MVISELEPGEVNIDVCETKAGTKAKNNVFHGSSSGANGKSAVSPKVSSTNAGISSIKMLTFDISMVKNSKRLADLGSCIEDGSKELRSPIESKRPCCSVASTGKVSEVDSFLGFQSVFSFL 1252
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A2P5XNC9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15798 PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.851e-79
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKH+ADLGS IQDGRKDKPFPSDSKRQCRSLA TDQAREVDSFLGFQSVFSFL
Sbjct:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHLADLGSSIQDGRKDKPFPSDSKRQCRSLASTDQAREVDSFLGFQSVFSFL 121
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A1U8LCL2_GOSHI (DExH-box ATP-dependent RNA helicase DExH17 isoform X3 OS=Gossypium hirsutum OX=3635 GN=LOC107926069 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.836e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  912 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1032
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A2P5R6A2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20727 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.656e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  960 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1080
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A1U8LCM1_GOSHI (DExH-box ATP-dependent RNA helicase DExH17 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107926069 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.952e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1097 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1217
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A2P5VYK7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA36784 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.648e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1065 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1185
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A0B0PEK9_GOSAR (Putative ATP-dependent DNA helicase HFM1 OS=Gossypium arboreum OX=29729 GN=F383_05509 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.720e-60
Identity = 102/121 (84.30%), Postives = 105/121 (86.78%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTK GTK K+NVLQ SS GANG+ AVSPKVSSTKT T S QMLSFDIS  KNSKH+ADLGS IQDG KDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  358 MVISEPEPGEVNRDACGTKAGTKTKNNVLQGSSSGANGESAVSPKVSSTKTATLSVQMLSFDISMAKNSKHLADLGSSIQDGWKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 478
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A1U8LGP9_GOSHI (DExH-box ATP-dependent RNA helicase DExH17 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107926069 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.904e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1098 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1218
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A0D2RYP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G063400 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.349e-60
Identity = 106/121 (87.60%), Postives = 109/121 (90.08%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTKVGTK K+NVLQ SSGGANG+ AVSPKVSSTKT TSS QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct: 1090 MVISEPEPGEVNRDACGTKVGTKTKNNVLQGSSGGANGESAVSPKVSSTKTATSSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1210
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A0B0PJ59_GOSAR (Putative ATP-dependent DNA helicase HFM1 OS=Gossypium arboreum OX=29729 GN=F383_05509 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.556e-60
Identity = 102/121 (84.30%), Postives = 105/121 (86.78%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGTK GTK K+NVLQ SS GANG+ AVSPKVSSTKT T S QMLSFDIS  KNSKH+ADLGS IQDG KDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  354 MVISEPEPGEVNRDACGTKAGTKTKNNVLQGSSSGANGESAVSPKVSSTKTATLSVQMLSFDISMAKNSKHLADLGSSIQDGWKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 474
[Close]
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Match: A0A2P5XNB8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15815 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.957e-57
Identity = 102/121 (84.30%), Postives = 106/121 (87.60%), Query Frame = 0 
Query:    1 MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTKTGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLAYTDQAREVDSFLGFQSVFSFL 121
            MVISEPEPGEVNRDACGT+ GTK K+NVLQ SS GANG+ AVSPKVSSTKT T S QMLSFDIS  KNSKH+ADLGS IQDGRKDKP PSDSKRQ RSLA TDQAREV SFLGFQSVFSFL
Sbjct:  936 MVISEPEPGEVNRDACGTRAGTKTKNNVLQGSSSGANGESAVSPKVSSTKTATLSVQMLSFDISMAKNSKHLADLGSSIQDGRKDKPSPSDSKRQSRSLASTDQAREVGSFLGFQSVFSFL 1056
The following BLAST results are available for this feature:
BLAST of CotAD_17715 vs. NCBI nr
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1347706454|gb|PPS04865.1|3.393e-7997.52hypothetical protein GOBAR_AA15798 [Gossypium barb... [more]
gi|823253392|ref|XP_012459321.1|2.120e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|1028938319|ref|XP_016712346.1|2.186e-6087.60PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|823253390|ref|XP_012459320.1|2.371e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|1344108607|gb|PPD82339.1|3.162e-6087.60hypothetical protein GOBAR_DD20727 [Gossypium barb... [more]
gi|823253384|ref|XP_012459317.1|5.651e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|823253394|ref|XP_012459322.1|5.683e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|1028938317|ref|XP_016712345.1|5.895e-6087.60PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|823253378|ref|XP_012459314.1|6.054e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
gi|823253386|ref|XP_012459318.1|6.148e-6087.60PREDICTED: ATP-dependent DNA helicase MER3 homolog... [more]
back to top
BLAST of CotAD_17715 vs. Vitis vinifera
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Vitis vinifera Genome)
Total hits: 1
Match NameE-valueIdentityDescription
pacid=178383598.964e-1638.84transcript=GSVIVT01032433001 locus=GSVIVG010324330... [more]
back to top
BLAST of CotAD_17715 vs. Cacao Genome Database
Analysis Date: 2015-11-24 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Cacao)
Total hits: 1
Match NameE-valueIdentityDescription
pacid=274547494.460e-3968.60transcript=Thecc1EG016933t1 locus=Thecc1EG016933 I... [more]
back to top
BLAST of CotAD_17715 vs. ExPASy TrEMBL
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2P5XNC9_GOSBA2.851e-7997.52Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8LCL2_GOSHI1.836e-6087.60DExH-box ATP-dependent RNA helicase DExH17 isoform... [more]
A0A2P5R6A2_GOSBA2.656e-6087.60Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8LCM1_GOSHI4.952e-6087.60DExH-box ATP-dependent RNA helicase DExH17 isoform... [more]
A0A2P5VYK7_GOSBA5.648e-6087.60Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A0B0PEK9_GOSAR5.720e-6084.30Putative ATP-dependent DNA helicase HFM1 OS=Gossyp... [more]
A0A1U8LGP9_GOSHI5.904e-6087.60DExH-box ATP-dependent RNA helicase DExH17 isoform... [more]
A0A0D2RYP1_GOSRA6.349e-6087.60Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A0B0PJ59_GOSAR6.556e-6084.30Putative ATP-dependent DNA helicase HFM1 OS=Gossyp... [more]
A0A2P5XNB8_GOSBA1.957e-5784.30Uncharacterized protein OS=Gossypium barbadense OX... [more]
back to top
BLAST of CotAD_17715 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Uniprot Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of CotAD_17715 vs. Araport11
Analysis Date: 2019-06-10 (BLASTp of BGI-CGP AD1 genome protein v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>CotAD_17715_BGI-AD1_v1.0 ID=CotAD_17715_BGI-AD1_v1.0; Name=CotAD_17715; organism=Gossypium hirsutum; type=mRNA; length=366bp
ATGGTCATTTCAGAACCGGAACCTGGGGAAGTCAACAGAGACGCTTGTGG
CACCAAGGTTGGCACAAAGGCGAAAAGCAATGTACTCCAAAGAAGTTCCG
GTGGAGCAAATGGAGATTTGGCTGTTTCTCCCAAAGTTTCAAGCACCAAA
ACTGGCACATCATCCTTTCAAATGCTATCATTTGATATTTCAAAGGTGAA
GAACAGCAAGCATGTAGCAGATCTTGGAAGCTTTATCCAGGATGGTCGGA
AAGACAAGCCATTTCCAAGTGACTCAAAAAGGCAGTGCCGCTCACTGGCC
TATACAGACCAAGCCAGGGAAGTAGACTCATTTCTTGGCTTTCAGAGTGT
TTTTTCATTCCTCTGA
back to top

protein sequence of CotAD_17715_BGI-AD1_v1.0

>CotAD_17715_BGI-AD1_v1.0 ID=CotAD_17715_BGI-AD1_v1.0; Name=CotAD_17715_BGI-AD1_v1.0; organism=Gossypium hirsutum; type=polypeptide; length=121bp
MVISEPEPGEVNRDACGTKVGTKAKSNVLQRSSGGANGDLAVSPKVSSTK
TGTSSFQMLSFDISKVKNSKHVADLGSFIQDGRKDKPFPSDSKRQCRSLA
YTDQAREVDSFLGFQSVFSFL
back to top

mRNA from alignment at At_chr10:70008517..70008882+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CotAD_17715_BGI-AD1_v1.0 ID=CotAD_17715_BGI-AD1_v1.0; Name=CotAD_17715; organism=Gossypium hirsutum; type=mRNA; length=366bp; location=Sequence derived from: At_chr10:70008517..70008882+ (Gossypium hirsutum
ATGGTCATTTCAGAACCGGAACCTGGGGAAGTCAACAGAGACGCTTGTGG
CACCAAGGTTGGCACAAAGGCGAAAAGCAATGTACTCCAAAGAAGTTCCG
GTGGAGCAAATGGAGATTTGGCTGTTTCTCCCAAAGTTTCAAGCACCAAA
ACTGGCACATCATCCTTTCAAATGCTATCATTTGATATTTCAAAGGTGAA
GAACAGCAAGCATGTAGCAGATCTTGGAAGCTTTATCCAGGATGGTCGGA
AAGACAAGCCATTTCCAAGTGACTCAAAAAGGCAGTGCCGCTCACTGGCC
TATACAGACCAAGCCAGGGAAGTAGACTCATTTCTTGGCTTTCAGAGTGT
TTTTTCATTCCTCTGA
back to top

Coding sequence (CDS) from alignment at At_chr10:70008517..70008882+

>CotAD_17715_BGI-AD1_v1.0 ID=CotAD_17715_BGI-AD1_v1.0; Name=CotAD_17715; organism=Gossypium hirsutum; type=CDS; length=366bp; location=Sequence derived from: At_chr10:70008517..70008882+ (Gossypium hirsutum
ATGGTCATTTCAGAACCGGAACCTGGGGAAGTCAACAGAGACGCTTGTGG
CACCAAGGTTGGCACAAAGGCGAAAAGCAATGTACTCCAAAGAAGTTCCG
GTGGAGCAAATGGAGATTTGGCTGTTTCTCCCAAAGTTTCAAGCACCAAA
ACTGGCACATCATCCTTTCAAATGCTATCATTTGATATTTCAAAGGTGAA
GAACAGCAAGCATGTAGCAGATCTTGGAAGCTTTATCCAGGATGGTCGGA
AAGACAAGCCATTTCCAAGTGACTCAAAAAGGCAGTGCCGCTCACTGGCC
TATACAGACCAAGCCAGGGAAGTAGACTCATTTCTTGGCTTTCAGAGTGT
TTTTTCATTCCTCTGA
back to top