Gorai.004G084700.1, Gorai.004G084700.1-JGI_221_v2.1 (mRNA) Gossypium raimondii
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0003164 (aalen=138,50% Dbxref=vitis:XP_002271506.1,arabidopsis:NP_172363.1.2) HSP 1 Score: 187.963 bits (476), Expect = 5.712e-48 Identity = 101/140 (72.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
MSSAA KGGRG GLQFPVGRVARFLKKGRYAERVGSGSP GNAARDNKKNRI+PRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA KGKGE+GS SQEF
Sbjct: 1 MSSAAIP--KGGRGKPKAKAVSKSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAGKGKGEVGSASQEF 138
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0022687 (aalen=140,22% Dbxref=vitis:XP_002271469.1,populus:POPTR_0013s02990.1) HSP 1 Score: 171.785 bits (434), Expect = 4.236e-43 Identity = 90/139 (64.75%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 97 SAAATTTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
S+ +TKGGRG GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK KGKG+IGS SQEF
Sbjct: 2 SSTGASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 140
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0003130 (aalen=139,41% Dbxref=vitis:XP_002271469.1,arabidopsis:NP_172363.1) HSP 1 Score: 170.244 bits (430), Expect = 1.232e-42 Identity = 89/134 (66.42%), Postives = 97/134 (72.39%), Query Frame = 1
Query: 112 TTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
+TKGGRG GLQFPVGR+ARFLK G+YA+RVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNLLPKK KGKG+IGS SQEF
Sbjct: 6 STKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPKKIGKGKGDIGSASQEF 139
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0027150 (aalen=134,41% Dbxref=vitis:XP_002271469.1,vitis:XP_002282795.1) HSP 1 Score: 138.658 bits (348), Expect = 3.974e-33 Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKK---ASKGKG 483
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKK +SK G
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKASG 130
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0025987 (aalen=135,26% Dbxref=vitis:XP_002271469.1) HSP 1 Score: 138.658 bits (348), Expect = 3.974e-33 Identity = 70/112 (62.50%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQE 507
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNK+ RI+PRHIQLAVRNDEELS+LLG VTIANGGVLPNIH LLPKK G G + +
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKRTRIVPRHIQLAVRNDEELSRLLGTVTIANGGVLPNIHNMLLPKKTGTGSKAGGPAADD 135
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0034591 (aalen=149,41% Dbxref=vitis:XP_002284305.1,arabidopsis:NP_195876.1) HSP 1 Score: 134.035 bits (336), Expect = 9.788e-32 Identity = 69/111 (62.16%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQ 504
GLQFPVGR+ R+LKKGRY++RVG+G+P GNAARDNKKNRIIPRH+ LAVRNDEEL KLL GVTIA+GGVLPNI+ LLPKK K E S S+
Sbjct: 31 GLQFPVGRIGRYLKKGRYSQRVGTGAPVYMAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTDKATKEPKSPSK 141
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0021771 (aalen=153,26% Dbxref=vitis:XP_002284305.1,vitis:XP_002274570.1) HSP 1 Score: 133.265 bits (334), Expect = 1.670e-31 Identity = 69/111 (62.16%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQ 504
GLQFPVGR+ R+LKKGRY++RVG+G+P GNAARDNKKNRIIPRH+ LAVRNDEEL KLL GVTIA+GGVLPNI+ LLPKK K E S S+
Sbjct: 31 GLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKNDKAPKEPKSPSK 141
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0022580 (aalen=142,50% Dbxref=vitis:XP_002271506.1,populus:POPTR_0013s01890.1) HSP 1 Score: 130.954 bits (328), Expect = 8.286e-31 Identity = 70/117 (59.83%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 121 GGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAS 471
GGR GLQFPVGR+ARFLKKGRYA+R G+G+P GNAARDNKKNRI PRH+ LAVRNDEEL KLL GVTIA+GGVLPNI+ LLPKK S
Sbjct: 9 GGRRGERKKAVSKSVKAGLQFPVGRIARFLKKGRYAQRYGAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTS 125
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0032381 (aalen=135,29% Dbxref=vitis:XP_002284738.1,populus:POPTR_0006s26540.1) HSP 1 Score: 80.4925 bits (197), Expect = 1.284e-15 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAE-RVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA 468
GLQFPVGR+ R LK A RVG+ + GNA++D K RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH++L+ K +
Sbjct: 35 GLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 133
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Match: CGD0025241 (aalen=134,41% Dbxref=vitis:XP_002285266.1,arabidopsis:NP_175683.1) HSP 1 Score: 80.1073 bits (196), Expect = 1.677e-15 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAE-RVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASK 474
GLQFPVGRV R LK A RVG+ + GNA++D K RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH++L+ K + +
Sbjct: 34 GLQFPVGRVHRLLKTRVNANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 134
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.432e-51 Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK KGKGEIGS SQEF
Sbjct: 63 LAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139 HSP 2 Score: 85.8853 bits (211), Expect = 2.432e-51 Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS A TTKGGRGK +K+VSRSSKAGLQFPVGR+ARFLK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 1 MSSTA--TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 68
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.383e-49 Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K K KG+IGS SQEF
Sbjct: 66 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142 HSP 2 Score: 86.2705 bits (212), Expect = 1.383e-49 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 91 MSSAAAT-TTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS A + TTKGGRGK K+VSRSSKAGLQFPVGR+ARFLK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 71
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.255e-49 Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K K KG+IGS SQEF
Sbjct: 66 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142 HSP 2 Score: 85.5001 bits (210), Expect = 2.255e-49 Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 91 MSSAAAT-TTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MS+ A + TTKGGRGK K+VSRSSKAGLQFPVGR+ARFLK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 1 MSTGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVL 71
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 3.093e-49 Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK+ K KGEIGS SQEF
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138 HSP 2 Score: 80.4925 bits (197), Expect = 3.093e-49 Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXX-XXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS+ A KGGRGK+K+ S KAGLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 1 MSSSGA---KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 67
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.368e-46 Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLPKK K K +IGS SQEF
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138 HSP 2 Score: 76.6406 bits (187), Expect = 4.368e-46 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+AR+LK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 26 GLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.368e-46 Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLPKK K K +IGS SQEF
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138 HSP 2 Score: 76.6406 bits (187), Expect = 4.368e-46 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+AR+LK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 26 GLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum OX=4565 GN=TH254 PE=2 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 2.220e-42 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKAS K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSK 126 HSP 2 Score: 78.1814 bits (191), Expect = 2.220e-42 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545300 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 7.245e-42 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126 HSP 2 Score: 77.7962 bits (190), Expect = 7.245e-42 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26380 PE=3 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 7.245e-42 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126 HSP 2 Score: 77.7962 bits (190), Expect = 7.245e-42 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0438000 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.870e-42 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126 HSP 2 Score: 77.7962 bits (190), Expect = 7.870e-42 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os12g34510.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 156.377 bits (394), Expect = 3.702e-38 Identity = 78/113 (69.03%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
GLQFPVGR+AR+LK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLPKK K K +IGS SQEF
Sbjct: 26 GLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os03g51200.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 149.828 bits (377), Expect = 3.465e-36 Identity = 78/113 (69.03%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
GLQFPVGR+AR+LK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELS+LLG VTIA GGVLPNI Q LLPKK GKG+IGS SQEF
Sbjct: 26 GLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGG-GKGDIGSASQEF 137
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os12g25120.1 (protein|core histone H2A/H2B/H3/H4, putative, expressed) HSP 1 Score: 142.895 bits (359), Expect = 4.235e-34 Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 480
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKA K
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os07g36130.1 (protein|core histone H2A/H2B/H3/H4, putative, expressed) HSP 1 Score: 142.895 bits (359), Expect = 4.235e-34 Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 480
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEEL+KLLGG TIA+GGV+PNIHQ+LLPKKA K
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os08g33100.1 (protein|core histone H2A/H2B/H3/H4, putative, expressed) HSP 1 Score: 138.658 bits (348), Expect = 7.987e-33 Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA 468
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELS+LLG VTIANGGV+PNIH LLPKKA
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os07g36140.1 (protein|core histone H2A/H2B/H3/H4, putative, expressed) HSP 1 Score: 135.961 bits (341), Expect = 5.177e-32 Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA 468
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH LLPKKA
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKA 122
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os05g02300.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 132.494 bits (332), Expect = 5.724e-31 Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQE 507
GLQFPVGR+ R+LKKGRYA+RVG+G+P GNAARDNKKNRIIPRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK ++ + S++
Sbjct: 33 GLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os03g17100.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 132.109 bits (331), Expect = 7.476e-31 Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIG 492
GLQFPVGR+ R+LKKGRYA+R+G+G+P GNAARDNKKNRIIPRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK ++ G
Sbjct: 36 GLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAG 142
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os01g31800.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 132.109 bits (331), Expect = 7.476e-31 Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIG 492
GLQFPVGR+ R+LKKGRYA+R+G+G+P GNAARDNKKNRIIPRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK ++ G
Sbjct: 36 GLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAG 142
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Match: LOC_Os05g38640.1 (protein|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed) HSP 1 Score: 129.028 bits (323), Expect = 6.329e-30 Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 70 IQANLQIMSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKK 465
++ ++ A A +GG G GLQFPVGR+ R+LK+GRY++R+G+G+P GNAARDNKKNRIIPRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK
Sbjct: 1 MEVGAKVPKKAGAGGRRGG-GGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 131
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0013s02990.1 () HSP 1 Score: 173.326 bits (438), Expect = 1.656e-43 Identity = 91/145 (62.76%), Postives = 101/145 (69.66%), Query Frame = 1
Query: 79 NLQIMSSAAATTTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
+L++ S +TKGGRG GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK KGKG+IGS SQEF
Sbjct: 41 DLKMSSKEGGASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 185
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0369s00210.1 () HSP 1 Score: 171.4 bits (433), Expect = 6.292e-43 Identity = 90/140 (64.29%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 94 SSAAATTTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
S +TKGGRG GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK KGKG+IGS SQEF
Sbjct: 3 SKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 142
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0005s04260.1 () HSP 1 Score: 171.4 bits (433), Expect = 6.292e-43 Identity = 90/140 (64.29%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 94 SSAAATTTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
S +TKGGRG GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKKNRI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLPKK KGKG+IGS SQEF
Sbjct: 3 SKEGGASTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 142
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0005s04250.1 () HSP 1 Score: 169.474 bits (428), Expect = 2.391e-42 Identity = 89/134 (66.42%), Postives = 96/134 (71.64%), Query Frame = 1
Query: 112 TTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
+TKGGRG GLQFPVGRVARFLK G+YAER+G+GSP GNAARDNKKNRI+PRHIQLAVRNDEEL KLLG VTIANGGVLPNIHQ LLPKK KGKG+IGSVSQ+F
Sbjct: 9 STKGGRGRAKASKAVSRSQKAGLQFPVGRVARFLKTGKYAERLGAGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELGKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSVSQDF 142
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0369s00200.1 () HSP 1 Score: 169.088 bits (427), Expect = 3.123e-42 Identity = 89/140 (63.57%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 94 SSAAATTTKGGRGXXXXXXXXXXXXX-GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 510
S+ ++KGGRG GLQFPVGRVARFLK G+YAER+G+GSP GNAARDNKKNRI+PRHIQLAVRNDEEL KLLG VTIANGGVLPNIHQ LLPKK KGKG+IGSVSQ+F
Sbjct: 3 SNEGRASSKGGRGRAKASKAVSRSQKAGLQFPVGRVARFLKTGKYAERLGAGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELGKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSVSQDF 142
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0004s03100.1 () HSP 1 Score: 142.895 bits (359), Expect = 2.397e-34 Identity = 71/102 (69.61%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKG 477
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELS+LLG VTIANGGVLPNIH LLPK+ SKG
Sbjct: 24 GLQFPVGRIARFLKTGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGQVTIANGGVLPNIHNTLLPKRVSKG 125
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0001s44140.1 () HSP 1 Score: 138.272 bits (347), Expect = 5.903e-33 Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA 468
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKK+
Sbjct: 59 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKS 157
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0011s13490.1 () HSP 1 Score: 137.887 bits (346), Expect = 7.709e-33 Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKK 465
GLQFPVGR+ARFLK G+YAERVG+G+P GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKK
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 121
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0013s01890.1 () HSP 1 Score: 136.732 bits (343), Expect = 1.717e-32 Identity = 75/135 (55.56%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 94 SSAAATTTKGGR-GXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGS 495
++ AT GGR G GLQFPVGR+ARFLKKGRYA+RVGSG+P GNAARDNKKNRI PRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK++ + GS
Sbjct: 3 ATTKATKGAGGRRGGERKKSVSKSTKAGLQFPVGRIARFLKKGRYAQRVGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAIRNDEELGKLLQGVTIASGGVLPNINPVLLPKKSASSEKSSGS 137
BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Match: POPTR_0006s08230.1 () HSP 1 Score: 135.191 bits (339), Expect = 4.997e-32 Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQ 504
GLQFPVGR+ R+LKKGRY++RVGSG+P GNAARDNKKNRIIPRH+ LAVRNDEEL KLL GVTIA+GGVLPNI+ LLPKK K E S S+
Sbjct: 31 GLQFPVGRIGRYLKKGRYSQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTEKAAKEPKSPSK 141
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|8081 (AT1G54690.1 | gamma histone variant H2AX | Chr1:20414607-20415206 REVERSE LENGTH=142 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 1.733e-50 Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K K KG+IGS SQEF
Sbjct: 66 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142 HSP 2 Score: 86.2705 bits (212), Expect = 1.733e-50 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 91 MSSAAAT-TTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS A + TTKGGRGK K+VSRSSKAGLQFPVGR+ARFLK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 1 MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 71
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|1657 (AT1G08880.1 | Histone superfamily protein | Chr1:2847144-2847676 REVERSE LENGTH=142 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 2.824e-50 Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP K K KG+IGS SQEF
Sbjct: 66 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142 HSP 2 Score: 85.5001 bits (210), Expect = 2.824e-50 Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 91 MSSAAAT-TTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MS+ A + TTKGGRGK K+VSRSSKAGLQFPVGR+ARFLK G+YAERVG+G+PVYLSAVLEYLAAEV
Sbjct: 1 MSTGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVL 71
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|7393 (AT1G51060.1 | histone H2A 10 | Chr1:18926948-18927443 FORWARD LENGTH=132 | 201606) HSP 1 Score: 110.153 bits (274), Expect = 5.151e-42 Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKK K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126 HSP 2 Score: 80.1073 bits (196), Expect = 5.151e-42 Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLKKG+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|34640 (AT4G27230.2 | histone H2A 2 | Chr4:13637515-13638325 REVERSE LENGTH=131 | 201606) HSP 1 Score: 111.694 bits (278), Expect = 1.228e-41 Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126 HSP 2 Score: 77.411 bits (189), Expect = 1.228e-41 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|34639 (AT4G27230.1 | histone H2A 2 | Chr4:13637515-13638325 REVERSE LENGTH=131 | 201606) HSP 1 Score: 111.694 bits (278), Expect = 1.228e-41 Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126 HSP 2 Score: 77.411 bits (189), Expect = 1.228e-41 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|45629 (AT5G54640.1 | Histone superfamily protein | Chr5:22196540-22197279 FORWARD LENGTH=130 | 201606) HSP 1 Score: 111.309 bits (277), Expect = 1.627e-41 Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126 HSP 2 Score: 77.411 bits (189), Expect = 1.627e-41 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YAERVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|24132 (AT3G20670.1 | histone H2A 13 | Chr3:7229472-7229963 FORWARD LENGTH=132 | 201606) HSP 1 Score: 112.079 bits (279), Expect = 3.125e-41 Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGK 580
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLPKKA K
Sbjct: 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126 HSP 2 Score: 75.8702 bits (185), Expect = 3.125e-41 Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ARFLK G+YA RVG+G+PVYL+AVLEYLAAEV
Sbjct: 24 GLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVL 65
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|37440 (AT5G02560.1 | histone H2A 12 | Chr5:575437-576456 FORWARD LENGTH=153 | 201606) HSP 1 Score: 102.064 bits (253), Expect = 3.362e-38 Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASK 574
L +VLELAGNAARDNKKNRIIPRH+ LAVRNDEEL LL GVTIA+GGVLPNI+ LLPKK+ K
Sbjct: 68 LAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132 HSP 2 Score: 75.8702 bits (185), Expect = 3.362e-38 Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ R+LKKGRY++RVG+G+PVYL+AVLEYLAAEV
Sbjct: 32 GLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVL 73
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|46603 (AT5G59870.1 | histone H2A 6 | Chr5:24115605-24116144 REVERSE LENGTH=150 | 201606) HSP 1 Score: 101.293 bits (251), Expect = 5.616e-38 Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAS 571
L +VLELAGNAARDNKK+RIIPRH+ LA+RNDEEL KLL GVTIA+GGVLPNI+ LLPKK++
Sbjct: 68 LAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSA 131 HSP 2 Score: 75.485 bits (184), Expect = 5.616e-38 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
GLQFPVGR+ RFLKKGRYA+R+G G+PVY++AVLEYLAAEV
Sbjct: 32 GLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVL 73
BLAST of Gorai.004G084700.1 vs. Araport11
Match: gnl|BL_ORD_ID|37441 (AT5G02560.2 | histone H2A 12 | Chr5:575437-576456 FORWARD LENGTH=177 | 201606) HSP 1 Score: 101.293 bits (251), Expect = 1.900e-37 Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 2
Query: 386 LQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASK 574
+VLELAGNAARDNKKNRIIPRH+ LAVRNDEEL LL GVTIA+GGVLPNI+ LLPKK+ K
Sbjct: 94 FRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 156 HSP 2 Score: 73.559 bits (179), Expect = 1.900e-37 Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query: 172 GLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAE 291
GLQFPVGR+ R+LKKGRY++RVG+G+PVYL+AVLEYLAAE
Sbjct: 32 GLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAE 71
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|823148127|ref|XP_012473972.1| (PREDICTED: histone H2AX-like [Gossypium raimondii] >gi|1028985627|ref|XP_016742978.1| PREDICTED: histone H2AX-like [Gossypium hirsutum] >gi|1029104614|ref|XP_016697149.1| PREDICTED: histone H2AX-like [Gossypium hirsutum] >gi|1050566548|ref|XP_017603827.1| PREDICTED: histone H2AX-like [Gossypium arboreum] >gi|728822802|gb|KHG05005.1| Histone H2AX [Gossypium arboreum] >gi|763755833|gb|KJB23164.1| hypothetical protein B456_004G084700 [Gossypium raimondii] >gi|1347719919|gb|PPS16137.1| hypothetical protein GOBAR_AA04423 [Gossypium barbadense]) HSP 1 Score: 151.754 bits (382), Expect = 2.232e-59 Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 140 HSP 2 Score: 107.457 bits (267), Expect = 2.232e-59 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1344108672|gb|PPD82398.1| (hypothetical protein GOBAR_DD20656 [Gossypium barbadense]) HSP 1 Score: 148.673 bits (374), Expect = 6.471e-58 Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA KGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKALKGKGEIGSVSQEF 140 HSP 2 Score: 105.531 bits (262), Expect = 6.471e-58 Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAA TTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAVTTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|60172173|gb|AAX14476.1| (putative histone 2a, partial [Gossypium hirsutum]) HSP 1 Score: 162.54 bits (410), Expect = 1.103e-55 Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1
Query: 4 KTNFKDY*KFPFKKLYLSKGKEIQANLQIMSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
KTNFKDY KFPFKKLYLSKGKEIQ NLQIMSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 3 KTNFKDYKKFPFKKLYLSKGKEIQTNLQIMSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 100 HSP 2 Score: 84.3445 bits (207), Expect = 1.103e-55 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT 511
L +VLELAGN ARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT
Sbjct: 95 LAAEVLELAGNXARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT 138
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1269918443|ref|XP_022771056.1| (histone H2AX-like [Durio zibethinus]) HSP 1 Score: 142.895 bits (359), Expect = 4.999e-55 Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKL+GGVTIANGGVLPNIHQNLLPKK KGKG+IGS SQEF
Sbjct: 63 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLMGGVTIANGGVLPNIHQNLLPKKNGKGKGDIGSASQEF 139 HSP 2 Score: 101.679 bits (252), Expect = 4.999e-55 Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1
Query: 97 SAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
S+AATTTKGGRGK KAKA+SRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 2 SSAATTTKGGRGKPKAKAISRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 68
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1204896137|ref|XP_021279992.1| (histone H2AX-like [Herrania umbratica]) HSP 1 Score: 146.362 bits (368), Expect = 7.903e-54 Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA KGKGE+GS SQEF
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAGKGKGEVGSASQEF 138 HSP 2 Score: 94.3597 bits (233), Expect = 7.903e-54 Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS A T KGGRGK KAKAVS+SSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSVA--TPKGGRGKPKAKAVSKSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 67
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1063461913|ref|XP_017979861.1| (PREDICTED: histone H2AX-like [Theobroma cacao]) HSP 1 Score: 145.976 bits (367), Expect = 1.148e-53 Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA KGKGE+GS SQEF
Sbjct: 62 LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAGKGKGEVGSASQEF 138 HSP 2 Score: 93.9745 bits (232), Expect = 1.148e-53 Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAA KGGRGK KAKAVS+SSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAA--IPKGGRGKPKAKAVSKSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 67
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|802794833|ref|XP_012092336.1| (histone H2AX [Jatropha curcas]) HSP 1 Score: 145.976 bits (367), Expect = 1.472e-53 Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNLLPKK +KGKGEIGSVSQEF
Sbjct: 69 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQNLLPKKTAKGKGEIGSVSQEF 145 HSP 2 Score: 93.5893 bits (231), Expect = 1.472e-53 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 97 SAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
SA A T +GGRG SKAK+VSRS KAGLQFPVGRVARFLK+GRYA+RVGSGSPVYLSAVLEYLAAEV
Sbjct: 8 SATAKTARGGRGISKAKSVSRSHKAGLQFPVGRVARFLKRGRYAQRVGSGSPVYLSAVLEYLAAEVL 74
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1344013543|ref|XP_023889415.1| (histone H2AX-like [Quercus suber] >gi|1336326583|gb|POE64756.1| histone h2ax [Quercus suber]) HSP 1 Score: 142.124 bits (357), Expect = 1.680e-53 Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELS+L+G VTIANGGVLPNIHQNLLPKKA KGKG+IGS SQEF
Sbjct: 65 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSRLMGSVTIANGGVLPNIHQNLLPKKAGKGKGDIGSASQEF 141 HSP 2 Score: 97.0561 bits (240), Expect = 1.680e-53 Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAA TTTKGGRGK K+VSRS KAGLQFPVGRVARFLK GRYA+RVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAETTTKGGRGKPKATKSVSRSHKAGLQFPVGRVARFLKTGRYAQRVGSGSPVYLSAVLEYLAAEVL 70
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1216969443|ref|XP_021681397.1| (histone H2AX-like [Hevea brasiliensis]) HSP 1 Score: 144.05 bits (362), Expect = 1.781e-53 Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNLLPKK +KGKGEIGS SQEF
Sbjct: 67 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGYVTIANGGVLPNIHQNLLPKKTAKGKGEIGSASQEF 143 HSP 2 Score: 95.5153 bits (236), Expect = 1.781e-53 Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query: 103 AATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
AATT KGGRGKSKAK+VSRS KAGLQFPVGRVARFLKKGRYAER+GSGSPVYL+AVLEYLAAEV
Sbjct: 8 AATTAKGGRGKSKAKSVSRSLKAGLQFPVGRVARFLKKGRYAERLGSGSPVYLTAVLEYLAAEVL 72
BLAST of Gorai.004G084700.1 vs. NCBI nr
Match: gi|1216255335|ref|XP_021611562.1| (histone H2AX-like [Manihot esculenta] >gi|1035920035|gb|OAY49625.1| hypothetical protein MANES_05G070300 [Manihot esculenta]) HSP 1 Score: 147.902 bits (372), Expect = 2.673e-53 Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA+KGKGEIGS SQEF
Sbjct: 67 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAAKGKGEIGSASQEF 143 HSP 2 Score: 90.8929 bits (224), Expect = 2.673e-53 Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query: 118 KGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
KGGRGKSKAK+VSRS KAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 13 KGGRGKSKAKSVSRSLKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 72
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A2P5YKK4_GOSBA (Histone H2A OS=Gossypium barbadense OX=3634 GN=GOBAR_AA04423 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.791e-59 Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 140 HSP 2 Score: 107.457 bits (267), Expect = 1.791e-59 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A0D2QU87_GOSRA (Histone H2A OS=Gossypium raimondii OX=29730 GN=B456_004G084700 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.791e-59 Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 140 HSP 2 Score: 107.457 bits (267), Expect = 1.791e-59 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A0B0MW56_GOSAR (Histone H2A OS=Gossypium arboreum OX=29729 GN=F383_30630 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.791e-59 Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 140 HSP 2 Score: 107.457 bits (267), Expect = 1.791e-59 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A1U8NY36_GOSHI (Histone H2A OS=Gossypium hirsutum OX=3635 GN=LOC107952215 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.791e-59 Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 140 HSP 2 Score: 107.457 bits (267), Expect = 1.791e-59 Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A2P5R6K5_GOSBA (Histone H2A OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20656 PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 5.191e-58 Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA KGKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKALKGKGEIGSVSQEF 140 HSP 2 Score: 105.531 bits (262), Expect = 5.191e-58 Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAA TTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAVTTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: Q5D895_GOSHI (Histone H2A (Fragment) OS=Gossypium hirsutum OX=3635 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 8.851e-56 Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1
Query: 4 KTNFKDY*KFPFKKLYLSKGKEIQANLQIMSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
KTNFKDY KFPFKKLYLSKGKEIQ NLQIMSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 3 KTNFKDYKKFPFKKLYLSKGKEIQTNLQIMSSAAATTTKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 100 HSP 2 Score: 84.3445 bits (207), Expect = 8.851e-56 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT 511
L +VLELAGN ARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT
Sbjct: 95 LAAEVLELAGNXARDNKKNRIIPRHIQLAVRNDEELSKLLGGVT 138
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A2P4I8D7_QUESU (Histone H2A OS=Quercus suber OX=58331 GN=CFP56_06366 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.348e-53 Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELS+L+G VTIANGGVLPNIHQNLLPKKA KGKG+IGS SQEF
Sbjct: 65 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSRLMGSVTIANGGVLPNIHQNLLPKKAGKGKGDIGSASQEF 141 HSP 2 Score: 97.0561 bits (240), Expect = 1.348e-53 Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGX-XXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSSAA TTTKGGRGK K+VSRS KAGLQFPVGRVARFLK GRYA+RVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSAAETTTKGGRGKPKATKSVSRSHKAGLQFPVGRVARFLKTGRYAQRVGSGSPVYLSAVLEYLAAEVL 70
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A2C9VTZ5_MANES (Histone H2A OS=Manihot esculenta OX=3983 GN=MANES_05G070300 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.144e-53 Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKA+KGKGEIGS SQEF
Sbjct: 67 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKAAKGKGEIGSASQEF 143 HSP 2 Score: 90.8929 bits (224), Expect = 2.144e-53 Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query: 118 KGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
KGGRGKSKAK+VSRS KAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEV
Sbjct: 13 KGGRGKSKAKSVSRSLKAGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVL 72
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: B9S3Z3_RICCO (Histone H2A OS=Ricinus communis OX=3988 GN=RCOM_0557200 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.144e-53 Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASK-GKGEIGSVSQEF 610
L +VLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLG VTIA+GGVLPNIHQNLLPKK++K GKGEIGSVSQEF
Sbjct: 64 LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGAVTIASGGVLPNIHQNLLPKKSAKGGKGEIGSVSQEF 141 HSP 2 Score: 98.9821 bits (245), Expect = 2.144e-53 Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 1
Query: 91 MSSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
MSS A T KGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYA+RVGSGSPVYLSAVLEYLAAEV
Sbjct: 1 MSSTATNTPKGGRGKSKAKAVSRSSKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Match: A0A2K3NSA8_TRIPR (Histone H2A OS=Trifolium pratense OX=57577 GN=L195_g002375 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 5.470e-53 Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 2
Query: 380 LILQVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGGVTIANGGVLPNIHQNLLPKKASKGKGEIGSVSQEF 610
L +VLELAGNAARDNKK RI+PRHIQLAVRNDEELSKL+G VTIANGGVLPNIHQNLLPKK KGKGEIGSVSQEF
Sbjct: 67 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKVGKGKGEIGSVSQEF 143 HSP 2 Score: 94.7449 bits (234), Expect = 5.470e-53 Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 94 SSAAATTTKGGRGXXXXXXXXXXXXXGLQFPVGRVARFLKKGRYAERVGSGSPVYLSAVLEYLAAEVC 297
+A ATT KGGRGK+K K+VSRSSKAGLQFPVGR+ARFLK GRYA+RVGSGSPVYLSAVLEYLAAEV
Sbjct: 5 DAATATTKKGGRGKTKTKSVSRSSKAGLQFPVGRIARFLKAGRYAQRVGSGSPVYLSAVLEYLAAEVL 72 The following BLAST results are available for this feature:
BLAST of Gorai.004G084700.1 vs. Cacao Genome Database
Analysis Date: 2013-03-27 (BLASTx of JGI Gossypium raimondii transcripts vs Theobroma cacao) Total hits: 11
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BLAST of Gorai.004G084700.1 vs. ExPASy Swiss-Prot
Analysis Date: 2019-07-17 (BLASTx of JGI Gossypium raimondii transcripts vs Uniprot Swissprot) Total hits: 10
BLAST of Gorai.004G084700.1 vs. Rice Genome Annotation Project
Analysis Date: 2013-03-27 (BLASTx of JGI Gossypium raimondii transcripts vs Oryza sativa) Total hits: 15
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BLAST of Gorai.004G084700.1 vs. Populus trichicarpa v2.0
Analysis Date: 2013-03-27 (BLASTx of JGI Gossypium raimondii transcripts vs Populus trichicarpa) Total hits: 23
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BLAST of Gorai.004G084700.1 vs. Araport11
Analysis Date: 2019-07-18 (BLASTx of JGI Gossypium raimondii transcripts vs arabidopsis Araport11) Total hits: 10
BLAST of Gorai.004G084700.1 vs. NCBI nr
Analysis Date: 2019-07-17 (BLASTx of JGI Gossypium raimondii transcripts vs NCBI nr) Total hits: 10
BLAST of Gorai.004G084700.1 vs. ExPASy TrEMBL
Analysis Date: 2019-08-05 (BLASTx of JGI Gossypium raimondii transcripts vs TrEMBL) Total hits: 10
InterPro
Analysis Name: InterproScan analysis for Gossypium raimondii D Genome JGI 221
Date Performed: 2013-05-31
Sequences
The
following sequences are available for this feature:
mRNA sequence >Gorai.004G084700.1-JGI_221_v2.1 ID=Gorai.004G084700.1-JGI_221_v2.1; Name=Gorai.004G084700.1; organism=Gossypium raimondii; type=mRNA; length=936bpback to top protein sequence of Gorai.004G084700.1 >Gorai.004G084700.1-JGI_221_v2.1 ID=Gorai.004G084700.1-JGI_221_v2.1; Name=Gorai.004G084700.1; organism=Gossypium raimondii; type=polypeptide; length=141bpback to top mRNA from alignment at Chr04:10595876..10596811+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Gorai.004G084700.1-JGI_221_v2.1 ID=Gorai.004G084700.1-JGI_221_v2.1; Name=Gorai.004G084700.1; organism=Gossypium raimondii; type=mRNA; length=936bp; location=Sequence derived from: Chr04:10595876..10596811+ (Gossypium raimondiiback to top Coding sequence (CDS) from alignment at Chr04:10595876..10596811+ >Gorai.004G084700.1-JGI_221_v2.1 ID=Gorai.004G084700.1-JGI_221_v2.1; Name=Gorai.004G084700.1; organism=Gossypium raimondii; type=CDS; length=423bp; location=Sequence derived from: Chr04:10595876..10596811+ (Gossypium raimondiiback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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