Cotton_D_gene_10000229, Cotton_D_gene_10000229 (mRNA) Gossypium raimondii

Transcript Overview
NameCotton_D_gene_10000229
Unique NameCotton_D_gene_10000229-BGI-CGP_v1.0
TypemRNA
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1185
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeChr9:9900313..9901497 +Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
rbrjR0681Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
rbrjR0688Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hbrbL0502Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL0548Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL2350Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbrbL2359Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
abrbL0315Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
abrbL1932Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
hnrbL0967Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL0976Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL2549Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrbL2557Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hjrbL1405Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL1415Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL3337Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjrbL3346Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
gbrbL1419Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL1426Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbrbL3336Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
ghrbL1393Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL1402Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghrbL3239Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
acrbL1421Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
acrbL1432Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hzrbL1484Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL1494Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL3457Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hzrbL3466Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzrbL1480Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL1488Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL3446Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzrbL3457Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gtbrbL1283Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
grbrbL1265Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
grbrbL1272Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghzrbL1415Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzrbL1424Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzrbL3302Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzrbL3304Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzrbL3318Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghtrbL1462Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL1474Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL3403Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghtrbL3412Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
gaurbL0606Gossypium australe (G2) genome CRI_v1.1Gossypium australe
adrbL1463Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adrbL1473Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adrbL3405Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
adrbL3413Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hgsrbL1454Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgsrbL1464Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgsrbL3402Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgsrbL3410Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
rbtoR0923Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rbtoR0930Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
rbtoR1032Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdrbL1473Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdrbL1482Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdrbL3431Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdrbL3440Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnrbL1316Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
fnrbL1325Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
dtrbL1583Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
dtrbL1591Gossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
hwrbL1356Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
hwrbL1365Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
awrbL1341Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
awrbL1352Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rbtwR1094Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR1206Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR1214Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbtwR1215Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
rbuhR0924Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rbuhR0931Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rbuhR1025Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
rbuhR1032Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
drirbL1551Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
drirbL1559Gossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
dsirbL0666Gossypium gossypioides (D6) genome ISU_v1Gossypium gossypioides
grhrbL1309Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grhrbL1318Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
grzrbL1222Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
grzrbL1229Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii

Orthologs
Gene/TranscriptAssemblySpecies
Gohir.A05G121000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Ghi_D05G03381Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
Gh_D05G119200.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
rna-gnl|WGS:VKDL|Gobar.D05G124500.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Ghicr24_D05G118600.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GH_A05G1219Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
CotAD_01471Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gbar_D05G012260.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
Ghi_A05G08331Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
CotAD_44560Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GB_A05G1231Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gene-E1A91_D05G129700v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gh_A05G108300.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Gohir.D05G122000.2Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
Ghir_D05G012170.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
rna-gnl|WGS_VKGI|Godar.D05G129900.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gohir.D05G122000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
EVM_prediction_Ga05G1278Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
Cotton_A_17068Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
rna-gnl|WGS_VKGI|Godar.A05G128600.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gar05G12510Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1Gossypium arboreum
rna-gnl|WGS:VKDL|Gobar.A05G126300.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
Gh_A05G1035Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghe05G13010Gossypium herbaceum (A1) 'Mutema' genome WHU_v1Gossypium herbaceum
gene-E1A91_A05G128600v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
Gh_D05G1152Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Gothu.00001357-RAGossypium thurberi (D1-35) genome ISU_v1Gossypium thurberi
GB_D05G1219Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
Gohir.A05G121000.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GH_D05G1220Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Ghicr24_A05G125300.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
rna-gnl|WGS_VKGE|Gotom.D05G131300.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Golon.005G128300-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
mikado.D5.v1_5G2300.1Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
XM_012586353.2Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
rna-gnl|WGS:JABEZZ|Gorai_00001344-RAGossypium raimondii (D5) 'D5-8' genome ISU_v1Gossypium raimondii
Grai_05G012710.1Gossypium raimondii (D5) 'Grai D502' genome HAU_v1Gossypium raimondii
Gorai.009G125500.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10000229_CDS_1Cotton_D_gene_10000229_CDS_1-BGI-CGP_v1.0Gossypium raimondiiCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Cotton_D_gene_10000229Cotton_D_gene_10000229-BGI-CGP_v1.0Gossypium raimondiipolypeptide


Homology
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|823218306|ref|XP_012441807.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Gossypium raimondii])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:   26 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 419
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|763789573|gb|KJB56569.1| (hypothetical protein B456_009G125500 [Gossypium raimondii])

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1029041157|ref|XP_016684368.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Gossypium hirsutum])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 381/394 (96.70%), Postives = 384/394 (97.46%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            MKASSLVVLVVLALLLF QIATEARSHSHHRGQQQQLRRR SGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPP      PLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPP+EITPPQPELTPAPPLIPAFSP ADEFTPVQPIF PPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:   26 MKASSLVVLVVLALLLFNQIATEARSHSHHRGQQQQLRRR-SGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPP------PLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPQEITPPQPELTPAPPLIPAFSPLADEFTPVQPIFDPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 412
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1347679236|gb|PPR83458.1| (hypothetical protein GOBAR_AA37257 [Gossypium barbadense])

HSP 1 Score: 303.908 bits (777), Expect = 5.493e-97
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIP FSPPADEFTPVQPIFAPPTNPNLPPGDEFTP TPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIP+PLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIPQQPLPFSS PAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:  174 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPTFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPATPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPSPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPQQPLPFSSIPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 390
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1050568043|ref|XP_017604688.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Gossypium arboreum])

HSP 1 Score: 301.982 bits (772), Expect = 2.128e-96
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIP FSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIP+PLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIPQQPLPFSS PAAPDTGFVDPVQPMLSPPQSFLPPFQLP SFDSPPFKN
Sbjct:  165 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPTFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPSPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPQQPLPFSSIPAAPDTGFVDPVQPMLSPPQSFLPPFQLPPSFDSPPFKN 381
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1028989697|ref|XP_016749705.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Gossypium hirsutum])

HSP 1 Score: 296.59 bits (758), Expect = 3.689e-94
Identity = 209/217 (96.31%), Postives = 212/217 (97.70%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIP FSPPADEFTPVQPIFAPPTNPNLPPGDEFTP TPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIP+PLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIP QPLPFSS PAAPDTGFVDPVQPMLSPPQSFLPPFQLP SFDSPPFKN
Sbjct:  174 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPTFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPATPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPSPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPPQPLPFSSIPAAPDTGFVDPVQPMLSPPQSFLPPFQLPPSFDSPPFKN 390
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1204930539|ref|XP_021298497.1| (vegetative cell wall protein gp1-like [Herrania umbratica])

HSP 1 Score: 156.762 bits (395), Expect = 2.432e-42
Identity = 106/166 (63.86%), Postives = 119/166 (71.69%), Query Frame = 0 
Query:  213 LTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPT------DEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIP-QQPLPFSSTPAAPDTGFVDPVQPM 370
             TPAPPL+P FSPP                      DEFTP +P LPIFAPP       DEFQPAPPF+PI FPPPAQD PPD T+PAPLVPIFSSP +PP++PLLPPEQPFT  PPI++  G PN+ LPP V+P+IPEIP QQPLP SSTP APDTGFV+PVQPM
Sbjct:   38 FTPAPPLVPFFSPP----------------------DEFTPASPLLPIFAPPWEPNLPPDEFQPAPPFLPITFPPPAQDFPPDETVPAPLVPIFSSPTEPPQIPLLPPEQPFTFTPPIETNPGAPNLLLPPPVIPSIPEIPDQQPLPLSSTPPAPDTGFVEPVQPM 181
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|508778737|gb|EOY25993.1| (Uncharacterized protein TCM_027382 [Theobroma cacao])

HSP 1 Score: 162.155 bits (409), Expect = 3.582e-42
Identity = 110/166 (66.27%), Postives = 121/166 (72.89%), Query Frame = 0 
Query:  213 LTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPT------DEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIP-QQPLPFSSTPAAPDTGFVDPVQPM 370
            LTPAPPL+P FSPP                      DEFTP TP LPIFAPP+      DEFQPAPPF+PI FPPPAQD PPD T PAPLVPIFSSPP+PP++PLLPPEQPFT  PPI++  G PN+FLPP V+P IPEIP QQ LPFSSTP APDTGFV+PVQPM
Sbjct:  233 LTPAPPLVPFFSPP----------------------DEFTPATPLLPIFAPPSEPNLPPDEFQPAPPFLPISFPPPAQDFPPDETEPAPLVPIFSSPPEPPQIPLLPPEQPFTFTPPIETNPGAPNLFLPPPVIPAIPEIPDQQALPFSSTPPAPDTGFVEPVQPM 376
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|1063508799|ref|XP_017978250.1| (PREDICTED: vegetative cell wall protein gp1 [Theobroma cacao])

HSP 1 Score: 159.844 bits (403), Expect = 2.817e-41
Identity = 124/207 (59.90%), Postives = 138/207 (66.67%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVF------LPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPT------DEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIP-QQPLPFSSTPAAPDTGFVDPVQPM 370
            FPWLSPPD  +    +PP  +F        PP E   P  ELTPAPPL+P FSPP                      DEF P TP LPIFAPP+      DEFQPAPPF+PI FPPPAQD PPD T P PLVPIFSSPP+PP++PLLPPEQPFT  PPI++  G PN+FLPP V+P IPEIP QQ LPFSSTP APDTGFV+PVQPM
Sbjct:  195 FPWLSPPDINAD---TPPIRLFSPPPDLFLPPPEEDTPPDELTPAPPLVPFFSPP----------------------DEFRPATPLLPIFAPPSEPNLPPDEFQPAPPFLPISFPPPAQDFPPDETEPTPLVPIFSSPPEPPQIPLLPPEQPFTFTPPIETNPGAPNLFLPPPVIPAIPEIPDQQALPFSSTPPAPDTGFVEPVQPM 376
[Close]
BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Match: gi|778689603|ref|XP_011652983.1| (PREDICTED: extensin-like [Cucumis sativus] >gi|700197759|gb|KGN52917.1| hypothetical protein Csa_4G006240 [Cucumis sativus])

HSP 1 Score: 84.7297 bits (208), Expect = 9.201e-15
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEA-----RSHSHHRG---QQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFL-PRRPP-PPLI 88
            MK ++ V+  VLALLL +Q+  EA     ++H H R     +++  R RS G  R  S+CDP +Q+LFGTCGQWPF  SPS DNPF  P RPP PPL+
Sbjct:    1 MKLTT-VIASVLALLLISQVLVEAGTEHKQNHQHVRKGWKDEEKRTRSRSNGRKRRRSDCDPFYQYLFGTCGQWPFPISPS-DNPFWAPSRPPLPPLV 96
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A0D2TIN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G125500 PE=4 SV=1)

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A1U8J6X5_GOSHI (leucine-rich repeat extensin-like protein 3 OS=Gossypium hirsutum OX=3635 GN=LOC107902756 PE=4 SV=1)

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 381/394 (96.70%), Postives = 384/394 (97.46%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            MKASSLVVLVVLALLLF QIATEARSHSHHRGQQQQLRRR SGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPP      PLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPP+EITPPQPELTPAPPLIPAFSP ADEFTPVQPIF PPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:   26 MKASSLVVLVVLALLLFNQIATEARSHSHHRGQQQQLRRR-SGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPAQPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPPSIPPP------PLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFLPPPQEITPPQPELTPAPPLIPAFSPLADEFTPVQPIFDPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 412
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A2P5VX86_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37257 PE=4 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.614e-97
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIP FSPPADEFTPVQPIFAPPTNPNLPPGDEFTP TPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIP+PLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIPQQPLPFSS PAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
Sbjct:  174 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPTFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPATPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPSPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPQQPLPFSSIPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 390
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A1U8PEW7_GOSHI (pollen-specific leucine-rich repeat extensin-like protein 3 OS=Gossypium hirsutum OX=3635 GN=LOC107958443 PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.099e-94
Identity = 209/217 (96.31%), Postives = 212/217 (97.70%), Query Frame = 0 
Query:  178 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN 394
            FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIP FSPPADEFTPVQPIFAPPTNPNLPPGDEFTP TPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIP+PLVPIFSSPPDPP+LPLLPPEQPFTDAPPI+STGPPNVFLPPQVVPTIPEIP QPLPFSS PAAPDTGFVDPVQPMLSPPQSFLPPFQLP SFDSPPFKN
Sbjct:  174 FPWLSPPDTPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPTFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPATPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPSPLVPIFSSPPDPPQLPLLPPEQPFTDAPPIESTGPPNVFLPPQVVPTIPEIPPQPLPFSSIPAAPDTGFVDPVQPMLSPPQSFLPPFQLPPSFDSPPFKN 390
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A061G979_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_027382 PE=4 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.009e-42
Identity = 110/166 (66.27%), Postives = 121/166 (72.89%), Query Frame = 0 
Query:  213 LTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPT------DEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIP-QQPLPFSSTPAAPDTGFVDPVQPM 370
            LTPAPPL+P FSPP                      DEFTP TP LPIFAPP+      DEFQPAPPF+PI FPPPAQD PPD T PAPLVPIFSSPP+PP++PLLPPEQPFT  PPI++  G PN+FLPP V+P IPEIP QQ LPFSSTP APDTGFV+PVQPM
Sbjct:  233 LTPAPPLVPFFSPP----------------------DEFTPATPLLPIFAPPSEPNLPPDEFQPAPPFLPISFPPPAQDFPPDETEPAPLVPIFSSPPEPPQIPLLPPEQPFTFTPPIETNPGAPNLFLPPPVIPAIPEIPDQQALPFSSTPPAPDTGFVEPVQPM 376
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A0A0KWW6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006240 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.729e-15
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEA-----RSHSHHRG---QQQQLRRRRSGGGGRTSSNCDPLFQFLFGTCGQWPFSTSPSPDNPFL-PRRPP-PPLI 88
            MK ++ V+  VLALLL +Q+  EA     ++H H R     +++  R RS G  R  S+CDP +Q+LFGTCGQWPF  SPS DNPF  P RPP PPL+
Sbjct:    1 MKLTT-VIASVLALLLISQVLVEAGTEHKQNHQHVRKGWKDEEKRTRSRSNGRKRRRSDCDPFYQYLFGTCGQWPFPISPS-DNPFWAPSRPPLPPLV 96
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A251PXW8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G095500 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.234e-13
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGR----------------TSSNCDPLFQFLFGTCGQWPFSTSPSPDNPF 78
            MKA++ +++  LALLL TQ  TEA+ +  H+  +++ R R +    R                T SNCDPLFQ+LFGTCGQWPF  +PSP NPF
Sbjct:    1 MKANTAIIVTTLALLLITQTITEAQHNPTHKEVEEEKRSRSTRSSSRSRSRSRSRRGSSHGGRTRSNCDPLFQYLFGTCGQWPFPINPSPSNPF 94
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A1R3HVD3_9ROSI (Putative Vegetative cell wall protein gp1 OS=Corchorus olitorius OX=93759 GN=COLO4_26651 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.524e-13
Identity = 114/225 (50.67%), Postives = 128/225 (56.89%), Query Frame = 0 
Query:  179 PWLSPPD-------TPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPF-KN 394
            PWLSPPD       TP++P  S PP  F  PP E   P   LTPAPPL+P F+PP              T P+LPP                  DEFQ APP +PI  PPP + +P      APLVPIFSSPPDPP+LPL          PPI +    P +FLPP V+PTIPEIPQ P PFSS P APD GFV+PVQPM  P  SFLPP+Q P S DSPPF KN
Sbjct:  213 PWLSPPDINPDDTPTPTIPFFSSPPPDFFLPPPEEDNPPAGLTPAPPLVPIFAPPV-------------TEPDLPP------------------DEFQ-APPILPITLPPPFETVPE-----APLVPIFSSPPDPPQLPL---------LPPIGTNPAAPTLFLPPPVIPTIPEIPQMPFPFSSAPPAPDAGFVEPVQPMSPPQISFLPPYQFPPSTDSPPFIKN 391
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A1R3G493_COCAP (Putative Vegetative cell wall protein gp1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_29027 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.141e-11
Identity = 113/225 (50.22%), Postives = 126/225 (56.00%), Query Frame = 0 
Query:  179 PWLSPPD-------TPSLPDLSPPPNVFLPPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDEFTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIFSSPPDPPRLPLLPPEQPFTDAPPIDST-GPPNVFLPPQVVPTIPEIPQQPLPFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPF-KN 394
            PWLSPPD       TP++P  S PP  F  PP E   P    TPAPPL+P F+PP              T P LPP                  DEFQ APP +PI  PPP + +P      APLVPIFSSPPDPP+LPL          PPI +    P +FLPP V+PTIPEIPQ P PFSS P APD GFV+P    +SPPQSFLPPFQ P S DSPPF KN
Sbjct:  209 PWLSPPDINPDDTPTPTIPFFSSPPPDFFLPPPEEDNPPAGFTPAPPLVPIFAPPV-------------TEPGLPP------------------DEFQ-APPILPITLPPPFETVPE-----APLVPIFSSPPDPPQLPL---------LPPIGTNPAAPTLFLPPPVIPTIPEIPQIPFPFSSAPPAPDAGFVEP----MSPPQSFLPPFQFPPSTDSPPFIKN 383
[Close]
BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Match: A0A2P5E641_TREOI (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_232310 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.429e-11
Identity = 39/106 (36.79%), Postives = 51/106 (48.11%), Query Frame = 0 
Query:    2 KASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSS---------------------------NCDPLFQFLFGTCGQWPFSTSPSPDNPFLP 80
            K +++VV++   LLL T+  TEA++H  H     Q++           S                           +CDPLFQ+LFGTCGQWPF TSPS DNPF P
Sbjct:   12 KKANIVVVIFFGLLLVTESITEAKNHHQHEHGGSQVKEESQKRRTSQRSNRSSRGSRGRGRGSGRSRGGSSGGTRSDCDPLFQYLFGTCGQWPFPTSPSQDNPFSP 117
The following BLAST results are available for this feature:
BLAST of Cotton_D_gene_10000229 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs UniProt Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cotton_D_gene_10000229 vs. TAIR10
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Cotton_D_gene_10000229 vs. NCBI nr
Analysis Date: 2019-06-28 (BLASTx of BGI-CGP D genome v1.0 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|823218306|ref|XP_012441807.1|0.000e+0100.00PREDICTED: leucine-rich repeat extensin-like prote... [more]
gi|763789573|gb|KJB56569.1|0.000e+0100.00hypothetical protein B456_009G125500 [Gossypium ra... [more]
gi|1029041157|ref|XP_016684368.1|0.000e+096.70PREDICTED: leucine-rich repeat extensin-like prote... [more]
gi|1347679236|gb|PPR83458.1|5.493e-9797.24hypothetical protein GOBAR_AA37257 [Gossypium barb... [more]
gi|1050568043|ref|XP_017604688.1|2.128e-9697.24PREDICTED: leucine-rich repeat extensin-like prote... [more]
gi|1028989697|ref|XP_016749705.1|3.689e-9496.31PREDICTED: pollen-specific leucine-rich repeat ext... [more]
gi|1204930539|ref|XP_021298497.1|2.432e-4263.86vegetative cell wall protein gp1-like [Herrania um... [more]
gi|508778737|gb|EOY25993.1|3.582e-4266.27Uncharacterized protein TCM_027382 [Theobroma caca... [more]
gi|1063508799|ref|XP_017978250.1|2.817e-4159.90PREDICTED: vegetative cell wall protein gp1 [Theob... [more]
gi|778689603|ref|XP_011652983.1|9.201e-1550.00PREDICTED: extensin-like [Cucumis sativus] >gi|700... [more]
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BLAST of Cotton_D_gene_10000229 vs. ExPASy TrEMBL
Analysis Date: 2019-06-26 (BLASTx of BGI-CGP D genome v1.0 vs Uniprot TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0D2TIN2_GOSRA0.000e+0100.00Uncharacterized protein OS=Gossypium raimondii OX=... [more]
A0A1U8J6X5_GOSHI0.000e+096.70leucine-rich repeat extensin-like protein 3 OS=Gos... [more]
A0A2P5VX86_GOSBA4.614e-9797.24Uncharacterized protein OS=Gossypium barbadense OX... [more]
A0A1U8PEW7_GOSHI3.099e-9496.31pollen-specific leucine-rich repeat extensin-like ... [more]
A0A061G979_THECC3.009e-4266.27Uncharacterized protein OS=Theobroma cacao OX=3641... [more]
A0A0A0KWW6_CUCSA7.729e-1550.00Uncharacterized protein OS=Cucumis sativus OX=3659... [more]
A0A251PXW8_PRUPE1.234e-1344.68Uncharacterized protein OS=Prunus persica OX=3760 ... [more]
A0A1R3HVD3_9ROSI2.524e-1350.67Putative Vegetative cell wall protein gp1 OS=Corch... [more]
A0A1R3G493_COCAP1.141e-1150.22Putative Vegetative cell wall protein gp1 OS=Corch... [more]
A0A2P5E641_TREOI1.429e-1136.79Uncharacterized protein OS=Trema orientale OX=6305... [more]
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InterPro
Analysis Name: InterProScan analysis of Gossypium raimondii D Genome v1.0 (BGI-CGP)
Date Performed: 2012-11-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 65..77
score: 1.1e-11coord: 79..100
score: 1.1e-11coord: 102..118
score: 1.1e-11coord: 128..145
score: 1.1
NoneNo IPR availableSEGsegsegcoord: 3..16
score: NAcoord: 25..50
score: NAcoord: 72..227
score: NAcoord: 270..283
score: NAcoord: 295..317
score: NAcoord: 368..392
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Cotton_D_gene_10000229-BGI-CGP_v1.0 ID=Cotton_D_gene_10000229-BGI-CGP_v1.0; Name=Cotton_D_gene_10000229; organism=Gossypium raimondii; type=mRNA; length=1185bp
ATGAAAGCAAGCAGCTTAGTGGTTTTGGTAGTGTTAGCTTTGCTTTTGTT
CACCCAAATTGCAACAGAGGCCAGGTCACATTCCCACCATAGAGGACAAC
AACAACAACTCAGAAGAAGAAGAAGCGGCGGCGGTGGAAGAACATCTTCA
AACTGTGACCCATTGTTTCAGTTCCTGTTTGGAACCTGCGGTCAATGGCC
TTTCTCAACATCTCCCTCTCCCGACAATCCTTTTCTTCCTAGAAGGCCTC
CCCCTCCTTTAATATCTCCACCGTTGCCTCCGCCTTTACCACCTCCTGCT
CAACCAATTGTTCAACCATCCCCTCCCCCATTACTCCCATCCCCACCACC
TGTTGTCTCTGCTCCACCACCTTCATCACCACCCCCCTCCCCTCCACCTC
AATCCCCACCACCACCACCTCCACCATTAGTGCCTTCACCACCACCACCA
TCAATCCCACCACCATCGCTAATCCCACCACCACCGCTAGTTTTTTCACC
TCCTCCGCCTGATGTTATTCCCTCGCCAGTATTCCCATGGCTAAGTCCTC
CAGACACCCCATCCCTTCCAGATCTCTCACCACCACCAAACGTTTTCCTT
CCACCGCCAGAGGAAATTACACCCCCACAACCTGAGTTGACACCAGCACC
ACCTCTAATCCCTGCATTTTCTCCACCGGCTGATGAATTTACACCAGTTC
AGCCCATATTTGCTCCTCCAACCAACCCGAACTTACCACCAGGCGATGAA
TTTACACCAACAACGCCATTTCTGCCCATATTCGCTCCACCAACAGATGA
GTTTCAACCAGCACCGCCATTTATGCCTATAGTTTTTCCACCGCCAGCAC
AAGATCTGCCGCCTGATGTGACTATCCCGGCACCTCTAGTCCCCATATTT
TCTTCACCACCTGACCCTCCACGACTTCCATTGTTACCACCAGAACAGCC
CTTTACAGATGCACCACCCATTGATTCAACTGGTCCACCAAATGTCTTTC
TGCCACCACAGGTGGTTCCCACAATCCCTGAGATTCCTCAGCAGCCGCTT
CCATTTTCATCGACTCCAGCAGCACCAGATACGGGTTTCGTTGATCCAGT
GCAGCCAATGTTGTCGCCTCCACAATCTTTCTTGCCACCGTTCCAGCTTC
CCTCATCGTTTGATTCGCCACCTTTTAAAAATTAA
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protein sequence of Cotton_D_gene_10000229

>Cotton_D_gene_10000229-BGI-CGP_v1.0 ID=Cotton_D_gene_10000229-BGI-CGP_v1.0; Name=Cotton_D_gene_10000229; organism=Gossypium raimondii; type=polypeptide; length=394bp
MKASSLVVLVVLALLLFTQIATEARSHSHHRGQQQQLRRRRSGGGGRTSS
NCDPLFQFLFGTCGQWPFSTSPSPDNPFLPRRPPPPLISPPLPPPLPPPA
QPIVQPSPPPLLPSPPPVVSAPPPSSPPPSPPPQSPPPPPPPLVPSPPPP
SIPPPSLIPPPPLVFSPPPPDVIPSPVFPWLSPPDTPSLPDLSPPPNVFL
PPPEEITPPQPELTPAPPLIPAFSPPADEFTPVQPIFAPPTNPNLPPGDE
FTPTTPFLPIFAPPTDEFQPAPPFMPIVFPPPAQDLPPDVTIPAPLVPIF
SSPPDPPRLPLLPPEQPFTDAPPIDSTGPPNVFLPPQVVPTIPEIPQQPL
PFSSTPAAPDTGFVDPVQPMLSPPQSFLPPFQLPSSFDSPPFKN
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mRNA from alignment at Chr9:9900313..9901497+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cotton_D_gene_10000229-BGI-CGP_v1.0 ID=Cotton_D_gene_10000229-BGI-CGP_v1.0; Name=Cotton_D_gene_10000229; organism=Gossypium raimondii; type=mRNA; length=1185bp; location=Sequence derived from: Chr9:9900313..9901497+ (Gossypium raimondii
ATGAAAGCAAGCAGCTTAGTGGTTTTGGTAGTGTTAGCTTTGCTTTTGTT
CACCCAAATTGCAACAGAGGCCAGGTCACATTCCCACCATAGAGGACAAC
AACAACAACTCAGAAGAAGAAGAAGCGGCGGCGGTGGAAGAACATCTTCA
AACTGTGACCCATTGTTTCAGTTCCTGTTTGGAACCTGCGGTCAATGGCC
TTTCTCAACATCTCCCTCTCCCGACAATCCTTTTCTTCCTAGAAGGCCTC
CCCCTCCTTTAATATCTCCACCGTTGCCTCCGCCTTTACCACCTCCTGCT
CAACCAATTGTTCAACCATCCCCTCCCCCATTACTCCCATCCCCACCACC
TGTTGTCTCTGCTCCACCACCTTCATCACCACCCCCCTCCCCTCCACCTC
AATCCCCACCACCACCACCTCCACCATTAGTGCCTTCACCACCACCACCA
TCAATCCCACCACCATCGCTAATCCCACCACCACCGCTAGTTTTTTCACC
TCCTCCGCCTGATGTTATTCCCTCGCCAGTATTCCCATGGCTAAGTCCTC
CAGACACCCCATCCCTTCCAGATCTCTCACCACCACCAAACGTTTTCCTT
CCACCGCCAGAGGAAATTACACCCCCACAACCTGAGTTGACACCAGCACC
ACCTCTAATCCCTGCATTTTCTCCACCGGCTGATGAATTTACACCAGTTC
AGCCCATATTTGCTCCTCCAACCAACCCGAACTTACCACCAGGCGATGAA
TTTACACCAACAACGCCATTTCTGCCCATATTCGCTCCACCAACAGATGA
GTTTCAACCAGCACCGCCATTTATGCCTATAGTTTTTCCACCGCCAGCAC
AAGATCTGCCGCCTGATGTGACTATCCCGGCACCTCTAGTCCCCATATTT
TCTTCACCACCTGACCCTCCACGACTTCCATTGTTACCACCAGAACAGCC
CTTTACAGATGCACCACCCATTGATTCAACTGGTCCACCAAATGTCTTTC
TGCCACCACAGGTGGTTCCCACAATCCCTGAGATTCCTCAGCAGCCGCTT
CCATTTTCATCGACTCCAGCAGCACCAGATACGGGTTTCGTTGATCCAGT
GCAGCCAATGTTGTCGCCTCCACAATCTTTCTTGCCACCGTTCCAGCTTC
CCTCATCGTTTGATTCGCCACCTTTTAAAAATTAA
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Coding sequence (CDS) from alignment at Chr9:9900313..9901497+

>Cotton_D_gene_10000229-BGI-CGP_v1.0 ID=Cotton_D_gene_10000229-BGI-CGP_v1.0; Name=Cotton_D_gene_10000229; organism=Gossypium raimondii; type=CDS; length=1185bp; location=Sequence derived from: Chr9:9900313..9901497+ (Gossypium raimondii
ATGAAAGCAAGCAGCTTAGTGGTTTTGGTAGTGTTAGCTTTGCTTTTGTT
CACCCAAATTGCAACAGAGGCCAGGTCACATTCCCACCATAGAGGACAAC
AACAACAACTCAGAAGAAGAAGAAGCGGCGGCGGTGGAAGAACATCTTCA
AACTGTGACCCATTGTTTCAGTTCCTGTTTGGAACCTGCGGTCAATGGCC
TTTCTCAACATCTCCCTCTCCCGACAATCCTTTTCTTCCTAGAAGGCCTC
CCCCTCCTTTAATATCTCCACCGTTGCCTCCGCCTTTACCACCTCCTGCT
CAACCAATTGTTCAACCATCCCCTCCCCCATTACTCCCATCCCCACCACC
TGTTGTCTCTGCTCCACCACCTTCATCACCACCCCCCTCCCCTCCACCTC
AATCCCCACCACCACCACCTCCACCATTAGTGCCTTCACCACCACCACCA
TCAATCCCACCACCATCGCTAATCCCACCACCACCGCTAGTTTTTTCACC
TCCTCCGCCTGATGTTATTCCCTCGCCAGTATTCCCATGGCTAAGTCCTC
CAGACACCCCATCCCTTCCAGATCTCTCACCACCACCAAACGTTTTCCTT
CCACCGCCAGAGGAAATTACACCCCCACAACCTGAGTTGACACCAGCACC
ACCTCTAATCCCTGCATTTTCTCCACCGGCTGATGAATTTACACCAGTTC
AGCCCATATTTGCTCCTCCAACCAACCCGAACTTACCACCAGGCGATGAA
TTTACACCAACAACGCCATTTCTGCCCATATTCGCTCCACCAACAGATGA
GTTTCAACCAGCACCGCCATTTATGCCTATAGTTTTTCCACCGCCAGCAC
AAGATCTGCCGCCTGATGTGACTATCCCGGCACCTCTAGTCCCCATATTT
TCTTCACCACCTGACCCTCCACGACTTCCATTGTTACCACCAGAACAGCC
CTTTACAGATGCACCACCCATTGATTCAACTGGTCCACCAAATGTCTTTC
TGCCACCACAGGTGGTTCCCACAATCCCTGAGATTCCTCAGCAGCCGCTT
CCATTTTCATCGACTCCAGCAGCACCAGATACGGGTTTCGTTGATCCAGT
GCAGCCAATGTTGTCGCCTCCACAATCTTTCTTGCCACCGTTCCAGCTTC
CCTCATCGTTTGATTCGCCACCTTTTAAAAATTAA
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