rna-gnl|WGS:VKDL|Gobar.D01G005500.2, rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1 (mRNA) Gossypium barbadense
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Transcript Overview
Cross References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT3G18990.1 (| AP2/B3-like transcriptional factor family protein | Chr3:6549077-6551568 REVERSE LENGTH=341 | 201606) HSP 1 Score: 441.81 bits (1135), Expect = 2.756e-156 Identity = 221/338 (65.38%), Postives = 262/338 (77.51%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGK-SYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPP----PKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
MPRPFFHKLI SST+Q+K+LR+PD FV KFKDELSVA ALTVPDGHVWRVG+RK DNK+WFQ+GW EF+DRY IRIGY LIFRYEGNSAFSV IFNL +SEINY S L+ S +NH K + F++LED++ ++ V + +A ++ P++ E P PKK GRKK+ DP + + S +DD E + +FYESASARKRTVTAEERERA+NAAK FEP+NPF RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIK+QL + KQW VRCLY+ G+AKFSQGWYEFT+ENNLGEGDVCVFELLR+R+FVLKVT FRV
Sbjct: 1 MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT3G18990.2 (| AP2/B3-like transcriptional factor family protein | Chr3:6548552-6551568 REVERSE LENGTH=372 | 201606) HSP 1 Score: 442.58 bits (1137), Expect = 4.067e-156 Identity = 222/340 (65.29%), Postives = 263/340 (77.35%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGK-SYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPP----PKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMD 334
MPRPFFHKLI SST+Q+K+LR+PD FV KFKDELSVA ALTVPDGHVWRVG+RK DNK+WFQ+GW EF+DRY IRIGY LIFRYEGNSAFSV IFNL +SEINY S L+ S +NH K + F++LED++ ++ V + +A ++ P++ E P PKK GRKK+ DP + + S +DD E + +FYESASARKRTVTAEERERA+NAAK FEP+NPF RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIK+QL + KQW VRCLY+ G+AKFSQGWYEFT+ENNLGEGDVCVFELLR+R+FVLKVT FRV D
Sbjct: 1 MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVND 339
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT1G49480.3 (| related to vernalization1 1 | Chr1:18314596-18315460 REVERSE LENGTH=226 | 201606) HSP 1 Score: 241.121 bits (614), Expect = 6.788e-79 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 168 RGSETPPP-KKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
+ ETP KK GRKK+ +P + + S DDSE + +FYESASARKRTVTAEERERA+NAAK FEP+NP+ RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIKLQL + KQW VRCLY+ G+AKFSQGWYEFT+ENN+GEGDVCVFELLR+R+FVL+VT FRV
Sbjct: 57 KAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT1G49480.2 (| related to vernalization1 1 | Chr1:18314596-18315460 REVERSE LENGTH=226 | 201606) HSP 1 Score: 241.121 bits (614), Expect = 6.788e-79 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 168 RGSETPPP-KKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
+ ETP KK GRKK+ +P + + S DDSE + +FYESASARKRTVTAEERERA+NAAK FEP+NP+ RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIKLQL + KQW VRCLY+ G+AKFSQGWYEFT+ENN+GEGDVCVFELLR+R+FVL+VT FRV
Sbjct: 57 KAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT1G49480.1 (| related to vernalization1 1 | Chr1:18314596-18315460 REVERSE LENGTH=226 | 201606) HSP 1 Score: 241.121 bits (614), Expect = 6.788e-79 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 168 RGSETPPP-KKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
+ ETP KK GRKK+ +P + + S DDSE + +FYESASARKRTVTAEERERA+NAAK FEP+NP+ RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIKLQL + KQW VRCLY+ G+AKFSQGWYEFT+ENN+GEGDVCVFELLR+R+FVL+VT FRV
Sbjct: 57 KAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT4G01580.1 (| AP2/B3-like transcriptional factor family protein | Chr4:685791-686668 FORWARD LENGTH=190 | 201606) HSP 1 Score: 89.7373 bits (221), Expect = 3.690e-21 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 2 PRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
P F KL+L ST++DK +RIP FVK +LS L P G+ + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN E NY +A+
Sbjct: 26 PVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV 133
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT3G18960.2 (| AP2/B3-like transcriptional factor family protein | Chr3:6542618-6543455 FORWARD LENGTH=194 | 201606) HSP 1 Score: 85.8853 bits (211), Expect = 1.152e-19 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 2 PRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
P F KL+L ST++DK ++IP FVK +LS L P G + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN+ E Y +A+
Sbjct: 26 PVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT3G18960.1 (| AP2/B3-like transcriptional factor family protein | Chr3:6542618-6543568 FORWARD LENGTH=209 | 201606) HSP 1 Score: 86.2705 bits (212), Expect = 1.324e-19 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 2 PRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
P F KL+L ST++DK ++IP FVK +LS L P G + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN+ E Y +A+
Sbjct: 26 PVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT1G49475.1 (| AP2/B3-like transcriptional factor family protein | Chr1:18312983-18313748 FORWARD LENGTH=190 | 201606) HSP 1 Score: 75.0998 bits (183), Expect = 7.552e-16 Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 6 FHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINY 104
F K+IL S + +K +++P FV+ F +L+ L P G + I++ ++VWF++GW EF + + + G+FL F YEG+S F V IF++ SEI Y
Sbjct: 34 FIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEY 131
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Match: AT3G18960.3 (| AP2/B3-like transcriptional factor family protein | Chr3:6542982-6543568 FORWARD LENGTH=172 | 201606) HSP 1 Score: 68.5514 bits (166), Expect = 1.429e-13 Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 0
Query: 21 RIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
+IP FVK +LS L P G + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN+ E Y +A+
Sbjct: 8 KIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 96
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1) HSP 1 Score: 441.81 bits (1135), Expect = 2.653e-155 Identity = 221/338 (65.38%), Postives = 262/338 (77.51%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGK-SYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPP----PKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
MPRPFFHKLI SST+Q+K+LR+PD FV KFKDELSVA ALTVPDGHVWRVG+RK DNK+WFQ+GW EF+DRY IRIGY LIFRYEGNSAFSV IFNL +SEINY S L+ S +NH K + F++LED++ ++ V + +A ++ P++ E P PKK GRKK+ DP + + S +DD E + +FYESASARKRTVTAEERERA+NAAK FEP+NPF RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIK+QL + KQW VRCLY+ G+AKFSQGWYEFT+ENNLGEGDVCVFELLR+R+FVLKVT FRV
Sbjct: 1 MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: REM19_ARATH (B3 domain-containing protein REM19 OS=Arabidopsis thaliana OX=3702 GN=REM19 PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 6.534e-78 Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 168 RGSETPPP-KKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRV 332
+ ETP KK GRKK+ +P + + S DDSE + +FYESASARKRTVTAEERERA+NAAK FEP+NP+ RVVLRPSYLYRGCIMYLPS FAE +LSG+SGFIKLQL + KQW VRCLY+ G+AKFSQGWYEFT+ENN+GEGDVCVFELLR+R+FVL+VT FRV
Sbjct: 57 KAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y1235_ORYSJ (B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0723500 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.845e-31 Identity = 109/377 (28.91%), Postives = 166/377 (44.03%), Query Frame = 0
Query: 3 RPFFHKLILSSTLQDKKLRIPDNFVK----------KFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSE------------INYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHC-VNWSGEVNLNAAKS---ANNQPI----RGSETPPPKKPG-----------RKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFA-EHLSGVSGFIKLQLPDGKQWSVRCLY-RGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
RP F K+++ Q +L+IP NF K K E S+AA L P G W V IR+ +F GWP+F+ +R F++FRY+GN+ F+ +F+ E + + + + P + E M + GG + +W+ E A K+ A+ P+ S +PP P R K DL++ S +Y+ Y S R+R V ER+RA A AF P+C + + ++Y +M P+ F+ +HL + L+ P GK WSV LY + + S+GW F N L EGD CVFEL+ + EF +V +FRV++ A
Sbjct: 18 RPHFFKVLVGDFKQ--RLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFDRTACEREDLMGGGGGDRPRKKRGRPRTAAASRDAARPKKDSVGKE-MVTYRASPSGGQPLQIVDSSWTPEPGSTAVKNEEDADELPVCELPASSASPPRHVPEGALDADGGAARRGAAKTRSLQDDLALASIPPSIRRYKGYVS---RRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRFPTGFSRQHLPRERTDVVLRDPGGKVWSV--LYIPNTRDRLSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFRVVEPA 384
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.552e-20 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 2 PRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
P F KL+L ST++DK +RIP FVK +LS L P G+ + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN E NY +A+
Sbjct: 26 PVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV 133
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y1223_ORYSJ (B3 domain-containing protein Os12g0592300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0592300 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 5.087e-20 Identity = 87/329 (26.44%), Postives = 145/329 (44.07%), Query Frame = 0
Query: 20 LRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIF----RYEGNSAFSVSIFNLYNSE------INYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCF-AEHLSGVSGFIKLQLPDGKQ-WSVRCLYRGGKAKFS-QGWYEFTVENNLGEGDVCVFELLR-SREFVLKVTVFRVMD 334
+ IP+ +F +++ L P G WRV + K +++ GW +F + ++ L F R G+ +F V IF+ E I +++ +G Q + + Y L D E S+ L G H + S ++N K+ N P + E P + K + + D H D Y + A+ +T EERE + + +P NP VL+ ++R ++ +PS F A+HL S I L P+ K+ W V+ + F+ Q W +F EN L EG +C+FEL++ +R + V V +D
Sbjct: 40 ISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNS--IGGQTQNAEQY---HLSDSEDTSTPSTFLVGSP---HKASTSKKLN---GKTKTN-PRKEPEDPNSSRSHVKHEMIEEEKSDDDDEHADYEHADYYYSRFANY----LTGEEREEIFSLV-SLQPGNPVFVTVLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRWIKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVD 351
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y1209_ORYSJ (B3 domain-containing protein LOC_Os12g40090 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0591500 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 7.170e-19 Identity = 88/335 (26.27%), Postives = 145/335 (43.28%), Query Frame = 0
Query: 20 LRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNS----AFSVSIFNLYNSE-----INYQSNALLGSQYNH-GKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRG-SETPPPKKPGRKKQKFDPNDQDLSVGHE----DDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCF-AEHLSGVSGFIKLQLPDGKQ-WSVRCLYRGGKAKF--SQGWYEFTVENNLGEGDVCVFELLR-SREFVLKVTVFRVMD 334
+ IP+ + F +++ L P G WRVG+ K +++ + GW +F + ++ L F G+ +F V IF+ E + N+ + +N G L D +S L G + K++ ++ + G ++T P K+P DPN V E DD Y + A+ +T EER+ + + +P NP VVL+ +++ R I+ +P+ F A+HL S I L P+ KQ WSV+ Y + W +F EN L EG+VC+FEL++ +R + V V D
Sbjct: 20 ISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEKVSCFFTGKKNSYMCKNFNSIGGQVAGQYLSSDSEDTSTPSVLIG----------------SPHKASTSKKLSGKTKTNPRKEPE------DPNCSHWHVIEEKNTDDDEHADYHYTRFANY----LTGEERDEIFSLV-SLQPGNPVFVVVLQTAHVRRRNILIVPTRFAADHLERKSHDILLIRPNRKQKWSVKYYYLSNTTRGFNCHRWIKFIRENRLREGNVCIFELMKGARRPTMTVHVIGKAD 327
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.274e-18 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 2 PRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNAL 109
P F KL+L ST++DK ++IP FVK +LS L P G + +++ ++WF EGW EF + + I G+FL+F Y+ NS+F V IFN+ E Y +A+
Sbjct: 26 PVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y1176_ORYSJ (B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0197600 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.145e-17 Identity = 90/375 (24.00%), Postives = 156/375 (41.60%), Query Frame = 0
Query: 3 RPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGY-----------FLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFG-GSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGH-----EDDSEMQ-------YRFYESASARK-----------------RTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFA-EHLSGVSGFIKLQLPDGKQWSVRCLYRGGKA--KFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVM 333
R FF L+ +L+ +++IP +F + +++ + +L G+ W + +F GW EF+ I+ G F + +E + +S F+ + S+ N ++ ++ + G E M+ A++ G K V++ E + K ++ + S K K + + G ED+S + RF +R+ R VT E++ A+ A+ F+ NPF ++ SY+Y G M +P F E L + I L P GK W V +Y ++ FS GW +F V NNL + DVCVFEL++ +KV ++RV+
Sbjct: 30 RSFFRVLLTLQSLE--RMKIPSSFNQCLQNQPTGMVSLVDRSGNKWSAELTSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEPSGIDKISTFSAHPSK-----NVIIKTESDEGGMVT--AAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEANVCESSRRKRAGASAGKSKVTSTSHNSTRGSSCSSDEDNSSSKSPNPPFLMRFLSGEVSRRGRCVSKGQRQLTVISQRRPVTEAEKDHALQRAREFKSKNPFAVQIMMESYVYVGFFMNIPCEFVRECLPHTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHIYRVV 393
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y3216_ORYSJ (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.354e-16 Identity = 70/324 (21.60%), Postives = 138/324 (42.59%), Query Frame = 0
Query: 18 KKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHC-VNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQ------YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLP---DGKQWSVRCLYRGGKAK-FSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVF 330
+++ IP+ F++ F+ ++ L + DG + V + K K+ Q GW F+ + +++G FL+F Y+G S V IF E + + L + HC W E L+ + ++++ P++ P+ + ++++D ++Q+ + ++ +Q + + +T ++++ + A P +LR S ++ G + C E+ F +L + GK W V C + + K S GW F ENNL GD+C+FELL+ +E+ + V +
Sbjct: 744 ERMIIPNEFLQYFRGKIPRTIKLQLRDGCTYDVQVTKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKLKVLIFGPSGCEKVHSRSTLKNA--------------------------------THCGEKW--EEPLHISSNSHDLPVKS-----PQNVSKSEKQWDSSEQENDTANIEEVALQGDDLQGHPVLNCILPKHTRLTDMQKQQLESKVGAIHSEIPIYGCILRKSRVH-GKSQTVDIC-REYADVYLPFKELNMTLQRHGKNWEVLCRTKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHII 1026 HSP 2 Score: 81.2629 bits (199), Expect = 1.336e-15 Identity = 75/293 (25.60%), Postives = 127/293 (43.34%), Query Frame = 0
Query: 18 KKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRG-CIMYLPSCFA-EHLSGVSGFIKLQLPDGKQWSVR-CLYRGGKAKFSQGWYEFTVENNL 307
+++ IP F + F+D++ L +G+ V + K NK+ +GW EF + + I++G FL+FRY GNS F V IF+ NA+ Q H ++ D + E +S + +HL S NQP +K D ++ + H SE E+ +A + EE RA+++ ++P V++ S + R C + + +A E+ G + LQ GK+W V+ C+ + S+GW +FT +N L
Sbjct: 160 RQMTIPYKFAENFRDQIQGTIKLKARNGNTCSVLVDKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQFEVKIFDPSGCVKAASHNAVNIGQ--HAQNMQGDPI---EILSCSDEHLRAQS---------------LTTERQNQP--------------EKDVIDNCNKKMKTEHASSSEDD---QETPTAEVHRMKVEEMVRAIHS------NHPVFVAVMKKSNVTRQPCYVAISRKYANEYFPGGDQMLTLQR-HGKRWQVKFCISKRKLRMLSKGWRKFTRDNEL 408
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 7.269e-15 Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 6 FHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINY 104
F K+IL S + +K +++P FV+ F +L+ L P G + I++ ++VWF++GW EF + + + G+FL F YEG+S F V IF++ SEI Y
Sbjct: 34 FIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEY 131
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|823129763|ref|XP_012450177.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Gossypium raimondii] >gi|763744777|gb|KJB12216.1| hypothetical protein B456_002G006500 [Gossypium raimondii]) HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0 Identity = 334/336 (99.40%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|1028944848|ref|XP_016715685.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Gossypium hirsutum]) HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0 Identity = 334/336 (99.40%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|823129761|ref|XP_012450169.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Gossypium raimondii] >gi|763744778|gb|KJB12217.1| hypothetical protein B456_002G006500 [Gossypium raimondii]) HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0 Identity = 334/342 (97.66%), Postives = 336/342 (98.25%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIR------GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIR GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRVKLRTSGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 342
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|1028944846|ref|XP_016715684.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Gossypium hirsutum]) HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0 Identity = 334/342 (97.66%), Postives = 336/342 (98.25%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIR------GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIR GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRVKLRTSGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 342
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|1050630997|ref|XP_017638438.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Gossypium arboreum]) HSP 1 Score: 691.034 bits (1782), Expect = 0.000e+0 Identity = 332/342 (97.08%), Postives = 335/342 (97.95%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIR------GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+N CVNWSGEVNLNAAKSANNQPIR GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRC+YRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNRCVNWSGEVNLNAAKSANNQPIRVKLRTSGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCIYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 342
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|590686206|ref|XP_007042311.1| (PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 [Theobroma cacao] >gi|508706246|gb|EOX98142.1| DNA binding protein, putative isoform 3 [Theobroma cacao]) HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0 Identity = 291/337 (86.35%), Postives = 320/337 (94.96%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKF+DELSVAAALTVPDGHVWRVGI+K DNKVWFQEGW EF++RYYIR+GYFLIFRYEGNSAFSVSIFNL NSEINYQSN L+GSQYNHGK YPF+ELEDDEC+S A+Q+LFGG+K+N+C+NW+GEVNL+ +K NNQPIRG+E P PKKPGRKK+KFDPN+QD SVGHED+ EM++RFYESASARKRTVTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDGKQW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRV++
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFRDELSVAAALTVPDGHVWRVGIKKADNKVWFQEGWQEFVERYYIRVGYFLIFRYEGNSAFSVSIFNLINSEINYQSNPLIGSQYNHGKQYPFEELEDDECISPALQNLFGGTKLNNCINWTGEVNLHTSKGVNNQPIRGAELPKPKKPGRKKRKFDPNEQDSSVGHEDEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLSGVSGFIKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVLEST 337
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|728811104|gb|KHG00016.1| (B3 domain-containing transcription factor VRN1 -like protein [Gossypium arboreum]) HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0 Identity = 281/337 (83.38%), Postives = 314/337 (93.18%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQD+KLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYI +GYFLIFRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S A+ +LFGGSK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF+P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDRKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKADNKAWFKEGWQEFVERYYISVGYFLIFRYEGNSAFSVSIFNLYNSEINYQTNALVGNQYNLGRQYPFEELEDDECVSPALPNLFGGSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFEPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|1028942732|ref|XP_016714600.1| (PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 [Gossypium hirsutum] >gi|1050618293|ref|XP_017631908.1| PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 [Gossypium arboreum]) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 281/337 (83.38%), Postives = 314/337 (93.18%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQD+KLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYI +GYFLIFRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S A+ +LFGGSK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF+P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDRKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKVDNKAWFKEGWQEFVERYYISVGYFLIFRYEGNSAFSVSIFNLYNSEINYQTNALVGNQYNLGRQYPFEELEDDECVSPALPNLFGGSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFEPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|823160875|ref|XP_012480290.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Gossypium raimondii] >gi|763765188|gb|KJB32442.1| hypothetical protein B456_005G240900 [Gossypium raimondii]) HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0 Identity = 282/337 (83.68%), Postives = 313/337 (92.88%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQDKKLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYIR+GYFLIFRYEGNSAFSVSIF+LYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S AM +LFG SK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDKKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKVDNKAWFKEGWQEFVERYYIRVGYFLIFRYEGNSAFSVSIFDLYNSEINYQTNALVGTQYNLGRQYPFEELEDDECVSPAMPNLFGRSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFQPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Match: gi|823259765|ref|XP_012462595.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Gossypium raimondii] >gi|1029133882|ref|XP_016745121.1| PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Gossypium hirsutum] >gi|763812397|gb|KJB79249.1| hypothetical protein B456_013G040000 [Gossypium raimondii] >gi|1344116770|gb|PPD89865.1| hypothetical protein GOBAR_DD13212 [Gossypium barbadense]) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 281/339 (82.89%), Postives = 311/339 (91.74%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSET--PPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQ+KKLRIPDNFVKKF+DELSVAAALTVPDGHVWRVGI+K DNKVWFQEGW EFL+RYYIR+GY L+FRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYNHGK YPF++LEDDEC+S A+Q+LFGGSK+N+C+NW G+ NL +K NNQPIRGS P PKK GRK+ KFDPN QD S G EDD +M++R YESASARKRTVTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSG IKLQLPDG+QWSVRCLY+GGKAKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+
Sbjct: 1 MPRPFFHKLILSTTLQEKKLRIPDNFVKKFRDELSVAAALTVPDGHVWRVGIKKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAFSVSIFNLYNSEINYQTNALVGTQYNHGKQYPFEQLEDDECISPALQNLFGGSKLNNCINWGGDANLQTSKGVNNQPIRGSGAMKPEPKKRGRKR-KFDPNVQDSSAGREDDVDMRFRCYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLSGVSGSIKLQLPDGRQWSVRCLYKGGKAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESG 338
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A0D2Q633_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G006500 PE=4 SV=1) HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0 Identity = 334/336 (99.40%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A1U8LME0_GOSHI (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107928907 PE=4 SV=1) HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0 Identity = 334/336 (99.40%), Postives = 336/336 (100.00%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A0D2M514_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G006500 PE=4 SV=1) HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0 Identity = 334/342 (97.66%), Postives = 336/342 (98.25%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIR------GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIR GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRVKLRTSGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 342
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A1U8LR47_GOSHI (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107928907 PE=4 SV=1) HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0 Identity = 334/342 (97.66%), Postives = 336/342 (98.25%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIR------GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSK+NHCVNWSGEVNLNAAKSANNQPIR GSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEM+YRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKLNHCVNWSGEVNLNAAKSANNQPIRVKLRTSGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMRYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEHLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 342
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A061E0J5_THECC (DNA binding protein, putative isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_006971 PE=4 SV=1) HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0 Identity = 291/337 (86.35%), Postives = 320/337 (94.96%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILSSTLQDKKLRIPDNFVKKF+DELSVAAALTVPDGHVWRVGI+K DNKVWFQEGW EF++RYYIR+GYFLIFRYEGNSAFSVSIFNL NSEINYQSN L+GSQYNHGK YPF+ELEDDEC+S A+Q+LFGG+K+N+C+NW+GEVNL+ +K NNQPIRG+E P PKKPGRKK+KFDPN+QD SVGHED+ EM++RFYESASARKRTVTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDGKQW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRV++
Sbjct: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFRDELSVAAALTVPDGHVWRVGIKKADNKVWFQEGWQEFVERYYIRVGYFLIFRYEGNSAFSVSIFNLINSEINYQSNPLIGSQYNHGKQYPFEELEDDECISPALQNLFGGTKLNNCINWTGEVNLHTSKGVNNQPIRGAELPKPKKPGRKKRKFDPNEQDSSVGHEDEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLSGVSGFIKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVLEST 337
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A0B0MM46_GOSAR (B3 domain-containing transcription factor VRN1-like protein OS=Gossypium arboreum OX=29729 GN=F383_00685 PE=4 SV=1) HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0 Identity = 281/337 (83.38%), Postives = 314/337 (93.18%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQD+KLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYI +GYFLIFRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S A+ +LFGGSK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF+P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDRKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKADNKAWFKEGWQEFVERYYISVGYFLIFRYEGNSAFSVSIFNLYNSEINYQTNALVGNQYNLGRQYPFEELEDDECVSPALPNLFGGSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFEPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A1U8LJA5_GOSHI (B3 domain-containing transcription factor VRN1 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107927970 PE=4 SV=1) HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0 Identity = 281/337 (83.38%), Postives = 314/337 (93.18%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQD+KLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYI +GYFLIFRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S A+ +LFGGSK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF+P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDRKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKVDNKAWFKEGWQEFVERYYISVGYFLIFRYEGNSAFSVSIFNLYNSEINYQTNALVGNQYNLGRQYPFEELEDDECVSPALPNLFGGSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFEPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A0D2NHT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G240900 PE=4 SV=1) HSP 1 Score: 596.275 bits (1536), Expect = 0.000e+0 Identity = 282/337 (83.68%), Postives = 313/337 (92.88%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSETPPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQDKKLRIPDNF+KKF+DELSVAAALTVPDGHVWRVGI+K DNK WF+EGW EF++RYYIR+GYFLIFRYEGNSAFSVSIF+LYNSEINYQ+NAL+G+QYN G+ YPF+ELEDDEC+S AM +LFG SK+N C+NWSGEVN +A K NNQPIRG+E P KKPGRKKQKF P+++D S+GHEDD EM+ RFYESASARKR VTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSGFIKLQLPDG+QW VRCLYRGG+AKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+ A
Sbjct: 1 MPRPFFHKLILSTTLQDKKLRIPDNFIKKFRDELSVAAALTVPDGHVWRVGIKKVDNKAWFKEGWQEFVERYYIRVGYFLIFRYEGNSAFSVSIFDLYNSEINYQTNALVGTQYNLGRQYPFEELEDDECVSPAMPNLFGRSKLN-CINWSGEVNHHAPKGVNNQPIRGAELPKLKKPGRKKQKFQPSEEDSSLGHEDDMEMRNRFYESASARKRIVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESA 336
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A2P5RSY0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD13212 PE=4 SV=1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 281/339 (82.89%), Postives = 311/339 (91.74%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSET--PPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQ+KKLRIPDNFVKKF+DELSVAAALTVPDGHVWRVGI+K DNKVWFQEGW EFL+RYYIR+GY L+FRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYNHGK YPF++LEDDEC+S A+Q+LFGGSK+N+C+NW G+ NL +K NNQPIRGS P PKK GRK+ KFDPN QD S G EDD +M++R YESASARKRTVTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSG IKLQLPDG+QWSVRCLY+GGKAKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+
Sbjct: 1 MPRPFFHKLILSTTLQEKKLRIPDNFVKKFRDELSVAAALTVPDGHVWRVGIKKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAFSVSIFNLYNSEINYQTNALVGTQYNHGKQYPFEQLEDDECISPALQNLFGGSKLNNCINWGGDANLQTSKGVNNQPIRGSGAMKPEPKKRGRKR-KFDPNVQDSSAGREDDVDMRFRCYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLSGVSGSIKLQLPDGRQWSVRCLYKGGKAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESG 338
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Match: A0A0D2VAA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G040000 PE=4 SV=1) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 281/339 (82.89%), Postives = 311/339 (91.74%), Query Frame = 0
Query: 1 MPRPFFHKLILSSTLQDKKLRIPDNFVKKFKDELSVAAALTVPDGHVWRVGIRKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYEGNSAFSVSIFNLYNSEINYQSNALLGSQYNHGKSYPFDELEDDECMSSAMQHLFGGSKINHCVNWSGEVNLNAAKSANNQPIRGSET--PPPKKPGRKKQKFDPNDQDLSVGHEDDSEMQYRFYESASARKRTVTAEERERAMNAAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAE-HLSGVSGFIKLQLPDGKQWSVRCLYRGGKAKFSQGWYEFTVENNLGEGDVCVFELLRSREFVLKVTVFRVMDGA 336
MPRPFFHKLILS+TLQ+KKLRIPDNFVKKF+DELSVAAALTVPDGHVWRVGI+K DNKVWFQEGW EFL+RYYIR+GY L+FRYEGNSAFSVSIFNLYNSEINYQ+NAL+G+QYNHGK YPF++LEDDEC+S A+Q+LFGGSK+N+C+NW G+ NL +K NNQPIRGS P PKK GRK+ KFDPN QD S G EDD +M++R YESASARKRTVTAEERERA+NAAKAFEP+NPFCRVVLRPSYLYRGCIMYLPSCFAE HLSGVSG IKLQLPDG+QWSVRCLY+GGKAKFSQGWYEFT+ENNLGEGDVCVFELLRSREFVLKVTVFRVM+
Sbjct: 1 MPRPFFHKLILSTTLQEKKLRIPDNFVKKFRDELSVAAALTVPDGHVWRVGIKKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAFSVSIFNLYNSEINYQTNALVGTQYNHGKQYPFEQLEDDECISPALQNLFGGSKLNNCINWGGDANLQTSKGVNNQPIRGSGAMKPEPKKRGRKR-KFDPNVQDSSAGREDDVDMRFRCYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLSGVSGSIKLQLPDGRQWSVRCLYKGGKAKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFRVMESG 338 The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. Araport11
Analysis Date: 2019-11-12 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs arabidopsis Araport11) Total hits: 10
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy Swiss-Prot
Analysis Date: 2019-11-12 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs UniProt Swissprot) Total hits: 10
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. NCBI nr
Analysis Date: 2019-11-14 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs NCBI nr) Total hits: 10
BLAST of rna-gnl|WGS:VKDL|Gobar.D01G005500.2 vs. ExPASy TrEMBL
Analysis Date: 2019-11-18 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for HGS_v1.1 Gossypium barbadense proteins
Date Performed: 2019-11-12
Sequences
The
following sequences are available for this feature:
protein sequence of rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1 >rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1; organism=Gossypium barbadense; type=polypeptide; length=336bpback to top mRNA from alignment at CM018215.1:379002..381582- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.D01G005500.2; organism=Gossypium barbadense; type=mRNA; length=2581bp; location=Sequence derived from: CM018215.1:379002..381582- (Gossypium barbadenseback to top Coding sequence (CDS) from alignment at CM018215.1:379002..381582- >rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.D01G005500.2_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.D01G005500.2; organism=Gossypium barbadense; type=CDS; length=1011bp; location=Sequence derived from: CM018215.1:379002..381582- (Gossypium barbadenseback to top |