Name	3T-F2-2017
Type	QTL
Description	GWAS for agronomic traits in Upland cotton using high-density SNPs
Contact	Lin, Zhong-Xu

Name
short fiber content
fruit branch node number
fiber elongation
first fruit branch position by node
days to 50% flowering
plant height
boll number
micronaire
fiber length
seed cotton weight per boll
lint yield
days to 50% boll opening
lint percent
first fruit branch position
fiber uniformity
fiber strength

Year	Publication
2017	Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X, Lin Z. Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnol J. 2017 Nov;15(11):1374-1386.

Linkage Group	Name	Type	Start	Stop	Peak
3-79 x TM-1, F2 (2015 SNP).chr05	qPH.3T-F2_c05.1	QTL	140.23	141.12	141.11
3-79 x TM-1, F2 (2015 SNP).chr05	qPH.3T-F2_c05.2	QTL	194.05	194.11	194.1
3-79 x TM-1, F2 (2015 SNP).chr10	qPH.3T-F2_c10	QTL	76.1	76.17	76.16
3-79 x TM-1, F2 (2015 SNP).chr14	qPH.3T-F2_c14.1	QTL	110.97	111.14	111.13
3-79 x TM-1, F2 (2015 SNP).chr14	qPH.3T-F2_c14.2	QTL	123.95	124.01	124
3-79 x TM-1, F2 (2015 SNP).chr17	qPH.3T-F2_c17	QTL	45.96	50.51	50.51
3-79 x TM-1, F2 (2015 SNP).chr23	qPH.3T-F2_c23.1	QTL	32.25	32.31	32.3
3-79 x TM-1, F2 (2015 SNP).chr23	qPH.3T-F2_c23.2	QTL	115.95	116.02	116.01
3-79 x TM-1, F2 (2015 SNP).chr26	qPH.3T-F2_c26	QTL	142.65	142.71	142.7
3-79 x TM-1, F2 (2015 SNP).chr01	qSFC.3T-F2_c01	QTL	137.47	137.53	137.52
3-79 x TM-1, F2 (2015 SNP).chr02	qSFC.3T-F2_c02.1	QTL	12.41	12.41	12.41
3-79 x TM-1, F2 (2015 SNP).chr02	qSFC.3T-F2_c02.2	QTL	21.78	21.87	21.81
3-79 x TM-1, F2 (2015 SNP).chr02	qSFC.3T-F2_c02.3	QTL	65.81	66.32	66.32
3-79 x TM-1, F2 (2015 SNP).chr06	qSFC.3T-F2_c06.1	QTL	60.78	60.81	60.8
3-79 x TM-1, F2 (2015 SNP).chr06	qSFC.3T-F2_c06.2	QTL	117.39	117.44	117.43
3-79 x TM-1, F2 (2015 SNP).chr07	qSFC.3T-F2_c07.1	QTL	86.37	86.46	86.4
3-79 x TM-1, F2 (2015 SNP).chr07	qSFC.3T-F2_c07.2	QTL	107.77	107.81	107.8
3-79 x TM-1, F2 (2015 SNP).chr08	qSFC.3T-F2_c08	QTL	155.66	155.71	155.7
3-79 x TM-1, F2 (2015 SNP).chr10	qSFC.3T-F2_c10	QTL	116.78	116.83	116.82
3-79 x TM-1, F2 (2015 SNP).chr12	qSFC.3T-F2_c12	QTL	42.26	42.38	42.3
3-79 x TM-1, F2 (2015 SNP).chr14	qSFC.3T-F2_c14	QTL	138.1	138.15	138.14
3-79 x TM-1, F2 (2015 SNP).chr17	qSFC.3T-F2_c17	QTL	50.45	50.52	50.51
3-79 x TM-1, F2 (2015 SNP).chr19	qSFC.3T-F2_c19.1	QTL	11.95	12.01	12
3-79 x TM-1, F2 (2015 SNP).chr19	qSFC.3T-F2_c19.2	QTL	143.1	143.1	143.1
3-79 x TM-1, F2 (2015 SNP).chr19	qSFC.3T-F2_c19.3	QTL	174.44	174.52	174.51