Name	3T-F2-2017
Type	QTL
Description	GWAS for agronomic traits in Upland cotton using high-density SNPs
Contact	Lin, Zhong-Xu

Name
short fiber content
fruit branch node number
fiber elongation
first fruit branch position by node
days to 50% flowering
plant height
boll number
micronaire
fiber length
seed cotton weight per boll
lint yield
days to 50% boll opening
lint percent
first fruit branch position
fiber uniformity
fiber strength

Year	Publication
2017	Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X, Lin Z. Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnol J. 2017 Nov;15(11):1374-1386.

Linkage Group	Name	Type	Start	Stop	Peak
3-79 x TM-1, F2 (2015 SNP).chr08	qFBNDN.3T-F2_c08	QTL	37.65	37.72	37.71
3-79 x TM-1, F2 (2015 SNP).chr17	qFBNDN.3T-F2_c17	QTL	28.66	28.72	28.71
3-79 x TM-1, F2 (2015 SNP).chr22	qFBNDN.3T-F2_c22	QTL	103.26	103.31	103.3
3-79 x TM-1, F2 (2015 SNP).chr05	qFEL.3T-F2_c05	QTL	164.6	164.6	164.6
3-79 x TM-1, F2 (2015 SNP).chr15	qFEL.3T-F2_c15	QTL	18.76	18.88	18.8
3-79 x TM-1, F2 (2015 SNP).chr22	qFEL.3T-F2_c22	QTL	99	104.62	104.62
3-79 x TM-1, F2 (2015 SNP).chr05	qFFBH.3T-F2_c05	QTL	139	141.12	141.12
3-79 x TM-1, F2 (2015 SNP).chr06	qFFBH.3T-F2_c06	QTL	60.35	61.05	61.04
3-79 x TM-1, F2 (2015 SNP).chr07	qFFBH.3T-F2_c07	QTL	94.1	100.15	98.47
3-79 x TM-1, F2 (2015 SNP).chr13	qFFBH.3T-F2_c13	QTL	16.73	18.51	18.51
3-79 x TM-1, F2 (2015 SNP).chr26	qFFBH.3T-F2_c26	QTL	82	82.05	82.04
3-79 x TM-1, F2 (2015 SNP).chr05	qFFBN.3T-F2_c05	QTL	131.15	131.3	131.2
3-79 x TM-1, F2 (2015 SNP).chr07	qFFBN.3T-F2_c07	QTL	89.83	91.1	89.83
3-79 x TM-1, F2 (2015 SNP).chr09	qFFBN.3T-F2_c09	QTL	4.68	4.73	4.72
3-79 x TM-1, F2 (2015 SNP).chr13	qFFBN.3T-F2_c13	QTL	116.31	117.22	116.31
3-79 x TM-1, F2 (2015 SNP).chr16	qFFBN.3T-F2_c16.1	QTL	0.38	0.47	0.41
3-79 x TM-1, F2 (2015 SNP).chr16	qFFBN.3T-F2_c16.2	QTL	43.82	44.75	44.75
3-79 x TM-1, F2 (2015 SNP).chr20	qFFBN.3T-F2_c20.1	QTL	100.08	100.11	100.1
3-79 x TM-1, F2 (2015 SNP).chr20	qFFBN.3T-F2_c20.2	QTL	139.78	139.81	139.8
3-79 x TM-1, F2 (2015 SNP).chr25	qFFBN.3T-F2_c25	QTL	47.96	48.1	48.09
3-79 x TM-1, F2 (2015 SNP).chr02	qFLW50.3T-F2_c02	QTL	23.08	23.14	23.1
3-79 x TM-1, F2 (2015 SNP).chr05	qFLW50.3T-F2_c05	QTL	205.64	205.71	205.7
3-79 x TM-1, F2 (2015 SNP).chr07	qFLW50.3T-F2_c07.1	QTL	44.6	44.6	44.6
3-79 x TM-1, F2 (2015 SNP).chr07	qFLW50.3T-F2_c07.2	QTL	88.1	91.1	89.83
3-79 x TM-1, F2 (2015 SNP).chr08	qFLW50.3T-F2_c08	QTL	129.58	129.61	129.6