Name	3T-F2-2017
Type	QTL
Description	GWAS for agronomic traits in Upland cotton using high-density SNPs
Contact	Lin, Zhong-Xu

Name
short fiber content
fruit branch node number
fiber elongation
first fruit branch position by node
days to 50% flowering
plant height
boll number
micronaire
fiber length
seed cotton weight per boll
lint yield
days to 50% boll opening
lint percent
first fruit branch position
fiber uniformity
fiber strength

Year	Publication
2017	Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X, Lin Z. Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnol J. 2017 Nov;15(11):1374-1386.

Linkage Group	Name	Type	Start	Stop	Peak
3-79 x TM-1, F2 (2015 SNP).chr02	qLY.3T-F2_c02	QTL	77.36	77.41	77.4
3-79 x TM-1, F2 (2015 SNP).chr04	qLY.3T-F2_c04	QTL	8.96	9.01	9
3-79 x TM-1, F2 (2015 SNP).chr05	qLY.3T-F2_c05	QTL	132.94	133.05	133.04
3-79 x TM-1, F2 (2015 SNP).chr06	qLY.3T-F2_c06	QTL	129.25	129.4	129.3
3-79 x TM-1, F2 (2015 SNP).chr07	qLY.3T-F2_c07.1	QTL	0	0	0
3-79 x TM-1, F2 (2015 SNP).chr07	qLY.3T-F2_c07.2	QTL	74.45	74.51	74.5
3-79 x TM-1, F2 (2015 SNP).chr09	qLY.3T-F2_c09	QTL	136.2	136.2	136.2
3-79 x TM-1, F2 (2015 SNP).chr10	qLY.3T-F2_c10.1	QTL	76.52	76.6	76.6
3-79 x TM-1, F2 (2015 SNP).chr10	qLY.3T-F2_c10.2	QTL	117.2	117.25	117.24
3-79 x TM-1, F2 (2015 SNP).chr11	qLY.3T-F2_c11	QTL	131.4	132.3	131.4
3-79 x TM-1, F2 (2015 SNP).chr12	qLY.3T-F2_c12	QTL	100.21	100.24	100.23
3-79 x TM-1, F2 (2015 SNP).chr15	qLY.3T-F2_c15	QTL	4.67	4.76	4.7
3-79 x TM-1, F2 (2015 SNP).chr16	qLY.3T-F2_c16	QTL	66.81	66.85	66.85
3-79 x TM-1, F2 (2015 SNP).chr17	qLY.3T-F2_c17	QTL	83.8	83.8	83.8
3-79 x TM-1, F2 (2015 SNP).chr19	qLY.3T-F2_c19	QTL	177.01	177.01	177.01
3-79 x TM-1, F2 (2015 SNP).chr20	qLY.3T-F2_c20	QTL	93.68	93.72	93.71
3-79 x TM-1, F2 (2015 SNP).chr21	qLY.3T-F2_c21	QTL	76.61	76.61	76.61
3-79 x TM-1, F2 (2015 SNP).chr23	qLY.3T-F2_c23.1	QTL	33.96	34.01	34
3-79 x TM-1, F2 (2015 SNP).chr23	qLY.3T-F2_c23.2	QTL	61.27	61.32	61.31
3-79 x TM-1, F2 (2015 SNP).chr24	qLY.3T-F2_c24.1	QTL	34.66	34.75	34.74
3-79 x TM-1, F2 (2015 SNP).chr24	qLY.3T-F2_c24.2	QTL	68.4	68.43	68.42
3-79 x TM-1, F2 (2015 SNP).chr05	qMIC.3T-F2_c05	QTL	111.59	111.62	111.61
3-79 x TM-1, F2 (2015 SNP).chr19	qMIC.3T-F2_c19	QTL	37.21	37.61	37.61
3-79 x TM-1, F2 (2015 SNP).chr26	qMIC.3T-F2_c26	QTL	77.3	77.3	77.3
3-79 x TM-1, F2 (2015 SNP).chr03	qPH.3T-F2_c03	QTL	96.78	96.84	96.8