PGML0075, PGML0075 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0075
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)6
Primer 1PGML0075_F: CCATACATTTGTCATGGTTTATTT
Primer 2PGML0075_R: AATTGCCAAATTTAAGGCGA
Product Length253
Publication[view all]
CommentBAC_ID=FITB2225.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:56602763..56603024 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:52277957..52278230 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:50290922..50291174 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:53475193..53475454 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr8chromosomeAt_chr8:75829312..75829573 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:52479695..52479956 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:55501793..55502054 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:56471973..56472234 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:55648948..55649209 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:52352989..52353250 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:52006382..52006652 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:53317131..53317398 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:53053932..53054187 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:56297359..56297626 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:52959652..52959931 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:56728629..56728890 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:50280679..50280931 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_13chromosomeChr_13:36139070..36139324 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:55368566..55368836 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A55.6PGML0075View
2Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A34PGML0075View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch18_Dt.13N/A25.3PGML0075View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A78.19PGML0075View
Sequence
>PGML0075 ID=PGML0075; Name=PGML0075; organism=Gossypium raimondii; type=genetic_marker; length=253bp
CCATACATTTGTCATGGTTTATTTTATTTATCACACAAAAATCTTATAAT
TTAATTATTTATCTAATAAATATCTATCTAATAATTTAATATAATTATTA
CAAATGTATACACTTCTATCAATACATTTGTATTAAATCACTACTATACA
TTTGTCTTTGTTTAACTTATTTCATAATAATAATAATAATAATTTAATAA
CATATTTTAACACATAAAAATCTTATGCTTATGTCGCCTTAAATTTGGCA
ATT