MUSB0849, MUSB0849 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0849
Genbank IDDX528425
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source TypeEST
Repeat Motif(ACAT)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0849_F: CGTGAGTCTTCAACAACCCAAGC
Primer 2MUSB0849_R: CCGAGACCAAGATCAGCTTCAG
Product Length211
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0849
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX528425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr02chromosomeMUSB0849:1..1021 .
Chr02:7730857..7731870 +
scaffold336supercontigMUSB0849:1..1021 .
scaffold336:278768..279781 +
Germplasm
Stock NameType
Acala Maxxaaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A151.91MUSB0849View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A52MUSB0849View
3AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A137MUSB0849View
4TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A21.6MUSB0849aView
5TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A87.29MUSB0849aView
6TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A88.2MUSB0849aView
7TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A80.9MUSB0849bView
8TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A96.5MUSB0849bView
9TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A99.1MUSB0849bView
10TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A99.15MUSB0849bView
11TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A88.21MUSB0849aView