PGML0989, PGML0989 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0989
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAA)9
Product Length174
PolymorphismP_ PGML0989
Publication[view all]
CommentBAC_ID=FITB9637.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:22261587..22261754 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:20356391..20356558 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:43585963..43586136 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:45113104..45113274 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:39859635..39859802 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:21811111..21811278 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:21297142..21297309 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:20796804..20796971 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:21240621..21240788 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:21284040..21284210 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:20815702..20815869 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:20263311..20263478 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:21105417..21105584 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:21973311..21973478 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:20728471..20728638 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:21704263..21704430 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:19326431..19326604 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:21210362..21210532 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:16327635..16327879 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:14354841..14355011 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:21121531..21121698 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:14487017..14487579 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:15962765..15962938 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr03chromosomeChr03:97696465..97696632 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A58.8PGML0989View
2GX1135 x GX100-2, RIL (2016)AD_ch14_Dt.02N/A58.7PGML0989View
30-153 x sGK9708, RIL (2016)AD_ch14_Dt.02N/A36.3PGML00989View
Sequence
>PGML0989 ID=PGML0989; Name=PGML0989; organism=Gossypium raimondii; type=genetic_marker; length=174bp
CAAGCTGAATTGAGCAAGGATCCTGAAGAAGAAGAAGAAGAAGAAGAAGA
AGATCCTGCAGAAATCAAACCAATGCAACCAGCTGAAATTCCTAATGAGG
TAGAACCAACTAAACCAATGACCGAACCTGGCATGGCTACCTCAACATAT
AGAACTCATTTGCCTCACCCAAAT