HAU0763, HAU0763 (genetic_marker) gossypium spp

Marker Overview
NameHAU0763
Genbank IDCO085338
TypeSSR
SpeciesGossypium spp.
Source SequenceCO085338
Source TypeEST
Repeat Motif(AAG)6
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0763_F: CAAGAACAGCAGCAGAAGAA
Primer 2HAU0763_R: TGTCACTGTCATTTGGTTCC
Product Length275
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO085338
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:1901061..1901335 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:63888415..63888689 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016624.1chromosomeCM016624.1:2328625..2328899 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt11chromosomeDt11:2500451..2500725 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14516supercontigscaffold14516:451174..451448 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:1949425..1949699 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:1969062..1969336 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017659.1chromosomeCM017659.1:1973612..1973886 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:1943078..1943352 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr11chromosomeChr11:61375847..61376121 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:2145313..2145587 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:1860210..1860474 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:1595783..1596057 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:2017842..2018116 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:1479896..1480171 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:1556736..1557010 -Gossypium lobatum (D7) genome ISU_v1n/a
F11chromosomeF11:1819880..1820154 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:184498789..184499063 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO085338CO085338Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A67.1HAU0763View
2LMY22 x LY343, RIL (2016)chr.21-1N/A31HAU0763View
Sequence
>HAU0763 ID=HAU0763; Name=HAU0763; organism=Gossypium spp.; type=genetic_marker; length=275bp
CAAGAACAGCAGCAGAAGAATCTGCTTCTGTATTTGCTGCACCAACAAAA
GTATTGAACCGAAGCACCCCTTTTTCGGCTGTCAATCAGCGGATTAAACA
TTTAGAGAAACAAGTAAAGGGAAAGAAGAAGAACAAGAAGAGGTGAGAAA
TCTTTCGTCCCGGAAGTCAAAAATCATCGGTTATAATAATAATTAACATA
TATTACAGTTTGGCATCATATTTATTTTTTTTAGGCTCCATTGTTTGGGG
CCATAGGAACCAAATGACAGTGACA