HAU0558, HAU0558 (genetic_marker) gossypium spp

Marker Overview
NameHAU0558
Genbank IDBQ412227
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ412227
Source TypeEST
Repeat Motif(TA)7
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0558_F: CACGAGTGTCCTTGCTACAG
Primer 2HAU0558_R: CCCATGATCAAAAGACAACA
Product Length297
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ412227
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:79236215..79236505 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:77706702..77706994 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:3888200..3888496 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49195438..49195736 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:2358734..2359024 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold34072supercontigscaffold34072:493..783 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81693296..81693586 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:84443163..84443453 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:81942075..81942365 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:77613858..77614150 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:62877743..62878035 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9660supercontigscaffold9660:91068..91360 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:78183243..78183535 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:78601668..78601960 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:80227260..80227550 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:88727693..88727986 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:78674047..78674341 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:85683007..85683297 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105638420..105638714 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107397660..107397958 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:3820650..3820941 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:24159622..24159912 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeChr04:173857242..173857532 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ412227BQ412227Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch22_Dt.04N/A52.2HAU0558View
2Emian-22 x 3-79, BC1 (2015)AD_ch22_Dt.04N/A56.1HAU0558View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A37.4HAU0558View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch04_At.04N/A50.9HAU0558View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch04_At.04N/A84.03HAU0558View
Sequence
>HAU0558 ID=HAU0558; Name=HAU0558; organism=Gossypium spp.; type=genetic_marker; length=297bp
CACGAGTGTCCTTGCTACAGAGACAAGGTGAATAACAAGGGCAAACCCAA
ATGCCCTTGAAAATGAAATATATTCGAGTTCGGGATTTCATCAAGCTTAA
AGATCGAGGACGAAGAGGCTATATATATATATACATATGCATGCTGATGG
TGTTATTATAAAAATAAACTGTTTTGTTGCTGTTGTTTTCCTTTGGGTTT
CTGTTTTGGTAGTGTTGAATAAAATTTCCCTTATATTTTCCCATCACCGC
CGTGTCCACCGCCATGCACACATGTTTTGTTGTCTTTTGATCATGGG