TMB2940, TMB2940 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB2940
Genbank IDBV679837
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679837.1
Source Typegenomic
Repeat Motif(ATT)11
PCR ConditionAnnealing temperature: 55
Primer 1TMB2940_F: TTTCATTTATTATGCATTCGTTTCA
Primer 2TMB2940_R: CCAATATATGTAGTAAAGGAACCACA
Product Length274
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679837
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A06chromosomeA06:64383773..64384045 +
At_chr10chromosomeAt_chr10:39566674..39566946 +
A06chromosomeA06:57944619..57944891 +
Ghir_A06chromosomeGhir_A06:51125212..51125483 -
A06chromosomeA06:50225552..50225843 -
A06chromosomeA06:50170024..50170293 -
A06chromosomeA06:49658499..49658771 -
A06chromosomeA06:71324763..71325035 +
Chr06chromosomeChr06:74899247..74899510 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679837.1BV679837.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch06_At.06N/A16.5TMB2940View
2Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A71.5TMB2940View
3GX1135 x GX100-2, RIL (2015)AD_ch06_At.06N/A37.9TMB2940View
4GX1135 x GX100-2, RIL (2016)AD_ch06_At.06N/A84.1TMB2940View
5GX1135 x VGX100-2, RIL (2016)AD_ch06_At.06N/A60.1TMB2940View
6Yumian-1 x T586, RIL (2009)AD_ch06_At.06N/A13.4TMB2940/280yView
Sequence
>TMB2940 ID=TMB2940; Name=TMB2940; organism=Gossypium hirsutum; type=genetic_marker; length=274bp
TTTCATTTATTATGCATTCGTTTCATTTTTATATTTTTATATTTTTTTAT
TTACATACATTTTTATATTCTTTTATTTTGTTTTATCTTTTACTATTGTT
ATCATTGTAATTTATTCATTTACTTATTTATTACTTTGTTATAAATCAAG
ATTATTATTATTATTATTATTATTATTATTATTTTACTTGTTTATATATC
TATTTAATATCCTCTATATACATATGTTTATTTTAAATGTAGATTATTTG
TGGTTCCTTTACTACATATATTGG