TMB0770, TMB0770 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0770
AliasTMH A21-D21
Genbank IDBV679416
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679416.1
Source Typegenomic
Repeat Motif(CA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB0770_F: TCTCTTCAGCTTGGTTGCTG
Primer 2TMB0770_R: CGTTTACGTGCTGGCCTTAT
Product Length249
PolymorphismP_ TMB0770
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679416
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D04chromosomeD04:6208173..6208421 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018218.1chromosomeCM018218.1:5679003..5679251 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_06chromosomeKI_06:47030904..47031151 -Gossypioides kirkii genome ISU_v3
D10_04chromosomeD10_04:5599609..5599865 -Gossypium turneri (D10) genome NSF_v1_a2
CM016617.1chromosomeCM016617.1:9499799..9500048 -Gossypium australe (G2) genome CRI_v1.1
At_chr9chromosomeAt_chr9:61823172..61823420 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D04chromosomeD04:5439180..5439428 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D04chromosomeGhir_D04:6111274..6111522 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D04chromosomeD04:6023041..6023289 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D04chromosomeD04:5983741..5983989 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D04chromosomeD04:5720300..5720548 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt04chromosomeDt04:5754729..5754977 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold13974supercontigscaffold13974:500950..501198 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D04chromosomeGbar_D04:5669318..5669566 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D04chromosomeD04:5627099..5627347 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017626.1chromosomeCM017626.1:5772503..5772751 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017652.1chromosomeCM017652.1:5978175..5978423 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017704.1chromosomeCM017704.1:5935068..5935318 -Gossypium darwinii (AD5) genome HGS_v1.1
D04chromosomeD04:6477408..6477656 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr04chromosomeChr04:45004377..45004627 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr12chromosomeChr12:5985553..5985804 -Gossypium thurberi (D1-5) genome CRI_v1
chr12chromosomechr12:5505033..5505284 -Gossypium armourianum (D2-1) genome ISU_v1
Chr12chromosomeChr12:5734828..5735091 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr12chromosomeChr12:5718138..5718387 -Gossypium aridum (D4) genome ISU_v1
Chr12chromosomeChr12:3863622..3863869 -Gossypium gossypioides (D6) genome ISU_v1
Chr12chromosomeChr12:5457649..5457896 -Gossypium lobatum (D7) genome ISU_v1
F04chromosomeF04:6134280..6134531 -Gossypium longicalyx (F1) genome NSF_v1
Chr04chromosomeChr04:9147958..9148209 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr12chromosomeTMB0770:2..520 .
Chr12:5577912..5578431 -
Chr12chromosomeTMB0770:2..520 .
Chr12:20185936..20186455 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679416.1BV679416.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch05_At.05N/A54.8TMHA21View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A291tmb0770View
3TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A155.7tmb0770View
4TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A41.7tmb0770View
5TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A41.74TMB0770View
Sequence
>TMB0770 ID=TMB0770; Name=TMB0770; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
TCTCTTCAGCTTGGTTGCTGTAGATAGCAATGGAACTAAGGTTTACAATT
TGGTAACTTTTTTTGAATATGTGTGTGTGTGTGTGTGTGTAACAGGTTTT
ACAATGTTGCAGGATGGAGAGTTCGTGAATAAACTTATACTCAAGTTCTG
TTCCCCACATACGCCCATCTTGAACATGGGACCTTGTTTGCACGTCTTGG
ATGTGTATAGGAAGAGTCTGATTCAAGACATAAGGCCAGCACGTAAACG