TMB0142, TMB0142 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0142
AliasTMF21
Genbank IDBV679296
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679296.1
Source Typegenomic
Repeat Motif(TA)5++(CA)6
PCR ConditionAnnealing temperature: 55
Primer 1TMB0142_F: TTAAGGCGGGAAACAATGTC
Primer 2TMB0142_R: TTGTGACGTCAACACGAACC
Product Length209
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679296
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:22778089..22778297 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:3795449..3795656 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:20938373..20938578 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:23175513..23175721 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:3390703..3390911 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:21488692..21488900 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:21310240..21310448 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:21352135..21352343 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:21872894..21873102 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:21752551..21752758 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:23136168..23136373 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10507supercontigscaffold10507:412481..412686 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:21085224..21085429 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:20913360..20913565 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:22453781..22453986 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:21611443..21611649 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:21092201..21092405 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:22040905..22041113 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:22094820..22095032 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:23488072..23488280 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679296.1BV679296.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A22.25TMB0142View
2AD-genome wide Reference Map (2009)AD_ch01_At.01N/A34TMB0142View
3TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A59.25TMB0142View
4Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A54.3TMB0142View
5TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A85.1TMB0142View
6TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A85.13TMB0142View
Sequence
>TMB0142 ID=TMB0142; Name=TMB0142; organism=Gossypium hirsutum; type=genetic_marker; length=209bp
TTAAGGCGGGAAACAATGTCTATATATATATGTATAGTTTGTGTGTGTGT
GGTGTGAGTTATAAAAAAAAAAACTAGCAGCAGCTAGAATAGAGAGAAAA
AAAAGTTTGTATTGTGTTTATTTGTGTGCAATAAAAAAATAGTATTTAAT
TTATTTTTATTACGCTTCCAACAAGTGGTATCAGAACTAGGTTCGTGTTG
ACGTCACAA