TMB0062, TMB0062 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0062
AliasTMD03
Genbank IDBV679270
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679270.1
Source Typegenomic
Repeat Motif(CA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB0062_F: GCATTGAAGGAAAAAGAAGAACC
Primer 2TMB0062_R: ATGCCTTGTTTGCTTGAAGT
Product Length250
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679270
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:18997593..18997842 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:13990069..13990314 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:17297712..17297981 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:19284911..19285242 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:26161354..26161601 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:41808668..41808912 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:17860713..17860962 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:13166072..13166316 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:17562250..17562499 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:14485472..14485716 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:18212150..18212399 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:14198250..14198494 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:17658979..17659228 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:14017719..14017963 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:18091901..18092150 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:14378126..14378370 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:17956644..17956893 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:18704420..18704689 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18164supercontigscaffold18164:35674..35943 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2793supercontigscaffold2793:437881..438126 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:14588447..14588692 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:17445167..17445436 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:14392218..14392463 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:17313717..17313986 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:14248148..14248392 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:18667136..18667381 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:15104560..15104804 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:17843805..17844126 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:14379641..14379886 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:17443521..17443780 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:14729449..14729693 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:18108136..18108385 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:18268705..18268996 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:19550889..19551220 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:13321030..13321274 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:14034592..14034836 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F01chromosomeF01:15797987..15798234 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679270.1BV679270.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch01_At.01N/A89TMB0062View
2TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A52.59TMB0062View
3Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A29.69TMB0062View
4TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A91.8TMB0062View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A93.2TMB0062View
6JLZM x ZJXSLS, F2 (2008)A_JZ_A01N/A78TMD03-aView
7JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A120.8TMD03-bView
8TM-1 x Hai-7124, BC1 (2007)AD_ch01_At.01N/A63.9TMD03-275View
9TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A66.37TMD03-275View
10Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch01_At.01N/A93.2TMD03-275View
11TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A67.4TMD03-275View
12Xinluzao-1 x Hai-7124, F2 (2008)AD_ch01_At.01N/A35.6TMHD03View
13TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A91.79TMB0062View
Sequence
>TMB0062 ID=TMB0062; Name=TMB0062; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
GCATTGAAGGAAAAAGAAGAACCTTCTTCAAAACCCTACACACACACACA
CACACACATGTCTCATTCTACTTAGTGGAACTTAACAAGTGTTACAACTT
CAGAATTTGTCCTTCTTAATTACCTACATTTTTTGAGAGAAACATAAATG
AGAATCCTGCATTATAAATATCAGACTAGTCTATCTAGTTGACTCCTAAC
CATGTTACTTTACAACCTAACTAGTACAGTACTTCAAGCAAACAAGGCAT