NAU4907, NAU4907 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4907
Genbank IDDT546635
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT546635.1
Source TypeEST
Repeat Motif(ccg)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU4907_F: TTGGGTTGGGTTGATTTAGT
Primer 2NAU4907_R: ATCTCAGCTGCGAATCTACC
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT546635
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:62293413..62293709 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:60947519..60947815 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:55426967..55427264 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:1265638..1265929 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:935494..935789 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:2857722..2858022 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:59967762..59968058 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold32supercontigScaffold32:196553..196850 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:61977028..61977324 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:60617060..60617360 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold13331supercontigscaffold13331:77828..78124 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:62260234..62260530 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:64815139..64815427 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:61210530..61210826 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:64148576..64148867 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:62290866..62291159 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:64458778..64459074 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_05chromosomeB_05:11821293..11821588 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:56737371..56737665 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:61841781..61842073 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E05chromosomeE05:102809160..102809450 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:75173283..75173585 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT546635.1DT546635.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A32.1NAU4907View
2Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A0NAU4907View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A332NAU4907View
4DH962 X Ji Mian 5, F2 (2015)AD_ch19_Dt.05N/A169.31NAU4907View
5DH962 x Ji Mian 5, RIL (2015)AD_ch19_Dt.05N/A6.4NAU4907View
6TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A177.4NAU4907-370View
7TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A176.48NAU4907-370View
8TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A15.1NAU4907-370View
Sequence
>NAU4907 ID=NAU4907; Name=NAU4907; organism=Gossypium hirsutum; type=genetic_marker; length=292bp
TTGGGTTGGGTTGATTTAGTCAGTTTACTTCCTTTTTTATCTATAATCTT
TTTTTCATCATCAATCCCCTTTGTATTTCTATAACAATTATTACCATTTA
TTTAACATTTTGAGCTTATACACTTTGATTTTGGATAACCCTTTTGTGAG
ATTCGAAAAAAAATCCCATTTTTTTTACTTATTTTCCGATGAGAGGGAGG
GGTCCCGCCGCCGCCGCCGCCGTCCCCGATGGAGAAGAACCCAAATACAG
AGGTGTTCGAAAAAGACCATGGGGTAGATTCGCAGCTGAGAT