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Marker Overview
Name | NAU3639 |
Genbank ID | CO114796 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (at)8 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3639_F: TGCAAAATCTGCCTTCAATA |
Primer 2 | NAU3639_R: CCAGTCACCAAGACAAATGA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch17_Dt.03 | N/A | 81.27 | NAU3639 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 89 | NAU3639 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 22 | NAU3639 | View |
4 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch03_At.03 | N/A | 23.9 | NAU3639 | View |
5 | T582 x Hai-7124, F2 (2010) | AD_ch03_At.03 | N/A | 85.9 | NAU3639 | View |
6 | Yumian-1 x 7235, RIL (2015) | AD_ch03_At.03 | N/A | 55.4 | NAU3639 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch07_At.07 | N/A | 19.57 | NAU3639 | View |
8 | DH962 x Ji Mian 5, RIL (2015) | AD_ch03_At.03 | N/A | 5.2 | NAU3639 | View |
9 | LMY22 x LY343, RIL (2016) | chr.3 | N/A | 115 | NAU3639 | View |
10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 85.9 | NAU3639-305 | View |
11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 83.33 | NAU3639-305 | View |
12 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 81.3 | NAU3639-305 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch17_Dt.03 | N/A | 70 | NAU3639-180 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch17_Dt.03 | N/A | 29.65 | NAU3639-180 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch17_Dt.03 | N/A | 68.3 | NAU3639-180 | View |
16 | SG 747 x Giza 75, BIL (2013) | AD_ch17_Dt.03 | N/A | 12.9 | NAU3639a | View |
17 | SG 747 x Giza 75, BIL (2013) | AD_ch03_At.03 | N/A | 78.5 | NAU3639b | View |
18 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch17_Dt.03 | N/A | 67.2 | NAU3639 | View |
Sequence
>NAU3639 ID=NAU3639; Name=NAU3639; organism=Gossypium raimondii; type=genetic_marker; length=167bp TGCAAAATCTGCCTTCAATATAATCCGAGAGAGATACCAAGAATGGAAAA CCAAATATTTATTTATATAATATATATATATATATAAACTATCTCATGTT ACAACATTGAGGCCTTGTCTGCTTTTGCAACTTGTCCCACATGCACATCA TTTGTCTTGGTGACTGG
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