NAU2984, NAU2984 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2984
Genbank IDCO087702
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gac)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU2984_F: AAGATGAACCTGATGCCAAT
Primer 2NAU2984_R: TAGCTCATACCCCCAAACTC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO087702
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:3565506..3565721 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_07chromosomeD5_07:3268953..3269180 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:50552945..50553172 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:42609186..42609401 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:3073169..3073384 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:3548571..3548786 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:3394877..3395092 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:3508447..3508662 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:3394331..3394546 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:3506169..3506384 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:3461474..3461689 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:3708189..3708404 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:3536667..3536891 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:3496215..3496433 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:3570776..3570991 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:50264477..50264704 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:3387959..3388180 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:3298250..3298477 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:3444707..3444934 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:2599243..2599488 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01_3447249chromosomeChr01_3447249:6051..6276 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:2977031..2977258 -Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:3363401..3363623 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:4839060..4839276 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch16_Dt.07N/A20.7NAU2984View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A0NAU2984View
3Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A10.1NAU2984View
4GX1135 x GX100-2, RIL (2016)AD_ch16_Dt.07N/A111.8NAU2984View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A56.1NAU2984View
6Yumian-1 x T586, RIL (2009)AD_ch16_Dt.07N/A36.7NAU2984/210tView
70-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A56.5NAU2984bView
80-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A57NAU2984aView
9CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A24.08NAU2984View
Sequence
>NAU2984 ID=NAU2984; Name=NAU2984; organism=Gossypium raimondii; type=genetic_marker; length=229bp
AAGATGAACCTGATGCCAATGGAGATGGGGCCAGTGGAGAAGAGGACGAA
GATGATGACGACGATGACGACGACGACGACGACGACGATGATGGCGAGGA
AGGTGAAGAAGAAGAGGAAGAGGAGGAAGAAGATGAAGAAGAGGAAGAGC
TTCAGCCACCGGCCAAAAAAGCGAAAATGACCTAAGATGTTTCTTGTTTA
GTCTTTGCTGAGTTTGGGGGTATGAGCTA