|
Marker Overview
Name | NAU2687 |
Genbank ID | CO075088 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (ta)6ca(ta)5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU2687_F: CTGAGACTGTCCATGTCCAA |
Primer 2 | NAU2687_R: ATCTGGGTTTTCCCTTTTTC |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
|
Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 83 | nau2687 | View |
2 | Yumian-1 x T586, RIL (2006) | AD_ch06_At.06 | N/A | 12.6 | nau2687 | View |
3 | Yumian-1 x T586, RIL (2015) | AD_ch06_At.06 | N/A | 68.2 | nau2687 | View |
4 | DH962 X Ji Mian 5, F2 (2015) | AD_ch06_At.06 | N/A | 25.18 | nau2687 | View |
5 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch25_Dt.06 | N/A | 42 | nau2687 | View |
6 | DH962 x Ji Mian 5, RIL (2015) | AD_ch06_At.06 | N/A | 38.4 | nau2687 | View |
7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch25_Dt.06 | N/A | 41.8 | nau2687 | View |
8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 90.3 | NAU2687-225 | View |
9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 49.06 | NAU2687-225 | View |
10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 61.7 | NAU2687-225 | View |
11 | Yumian-1 x T586, RIL (2009) | AD_ch06_At.06 | N/A | 17.7 | NAU2687/200y(C25) | View |
Sequence
>NAU2687 ID=NAU2687; Name=NAU2687; organism=Gossypium raimondii; type=genetic_marker; length=216bp CTGAGACTGTCCATGTCCAAATCCAAGAGAAATAAGTCTTCTTCACAACC AGAACAGAGAACATATATAGAAATATATATATATACATATATATATAACA AACTTAAGCCAAAGAAAAAGAATTTCATAATCTGAAATAAGAAAAAATGT ATAAAAAGAATCATATAATCATTATGCAGAAGCAGAAAATTTAAAAGAAA AAGGGAAAACCCAGAT
|