NAU2443, NAU2443 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2443
Genbank IDDT052254
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052254.1
Source TypeEST
Repeat MotifAAT(18)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2443_F: CGTTGAGAAGGAAAGCCTAA
Primer 2NAU2443_R: AGCCTGCTTCATGTTCTTTT
Product Length151
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052254
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:49524506..49524635 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:45618699..45618822 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr13chromosomeDt_chr13:17642523..17642652 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:45316005..45316134 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:48572734..48572860 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:49771491..49771620 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:48737891..48738020 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:45670524..45670653 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:47930587..47930710 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20493supercontigscaffold20493:63923..64046 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:45352433..45352556 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:46686142..46686265 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:46506022..46506142 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:49665495..49665618 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:46659878..46660010 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:49771249..49771378 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
E13chromosomeE13:93326715..93326850 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052254.1DT052254.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch18_Dt.13N/A59.96NAU2443View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch18_Dt.13N/A45.86NAU2443View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A27NAU2443View
4TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A52.43NAU2443View
5Yumian-1 x T586, F2:7 (2008)AD_ch18_Dt.13N/A23.1NAU2443View
6Yumian-1 x T586, RIL (2006)AD_ch18_Dt.13N/A25.9NAU2443View
7(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch18_Dt.13N/A9.4NAU2443View
8H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A83.8NAU2443View
9Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A42NAU2443View
10Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A29.3NAU2443View
11TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A53.3NAU2443View
12TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch18_Dt.13N/A51.7NAU2443View
13CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A62.9NAU2443View
14CCRI-35 x Yumian-1, RIL (2015)AD_ch18_Dt.13N/A40.3NAU2443View
15TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A68.9NAU2443-150View
16TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A62.21NAU2443-150View
17TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A59NAU2443-150View
18Yumian-1 x T586, RIL (2009)AD_ch18_Dt.13N/A66.2NAU2443/150t(C18)View
19CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A61.58NAU2443View
20TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A53.27NAU2443View
Sequence
>NAU2443 ID=NAU2443; Name=NAU2443; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
CGTTGAGAAGGAAAGCCTAAATTTTAATAAGAAATTGGCTCCAAACTATC
AAATATCACCATATACAAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAAACTGATTTAAAAGAACATGAAGCAGGC
T