NAU2336, NAU2336 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2336
AliasNAU2336=NAU2760
NAU2336=NAU2760=RC(NAU0803)
NAU0803
NAU2760
Genbank IDDT049909
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049909.1
Source TypeEST
Repeat MotifGAT(9)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2336_F: TGGAAAAGGAAGAGGAGAGA
Primer 2NAU2336_R: CCCTGAAGTTGTCAAGCTCT
Product Length196
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049909
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:61828620..61828815 -
A03chromosomeA03:96782597..96782768 -
CM018216.1chromosomeCM018216.1:58190828..58191038 -
CM018204.1chromosomeCM018204.1:94947902..94948073 -
D5_03chromosomeD5_03:8887167..8887353 +
KI_03chromosomeKI_03:36517774..36517966 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:123752858..123753029 -
D10_03chromosomeD10_03:8782186..8782372 +
CM016616.1chromosomeCM016616.1:14340446..14340617 +
Dt_chr5chromosomeDt_chr5:19364173..19364368 +
At_chr5chromosomeAt_chr5:44587930..44588101 +
D02chromosomeD02:59025645..59025840 -
A03chromosomeA03:89572696..89572867 -
Ghir_D02chromosomeGhir_D02:60791352..60791547 -
Ghir_A03chromosomeGhir_A03:101546548..101546719 -
D02chromosomeD02:61118420..61118615 -
A03chromosomeA03:100599723..100599894 -
D02chromosomeD02:62211125..62211320 -
A03chromosomeA03:98624361..98624532 -
D02chromosomeD02:59230794..59230986 -
A03chromosomeA03:93871119..93871290 -
Dt02chromosomeDt02:61579069..61579279 -
At03chromosomeAt03:91235848..91236019 -
scaffold4478supercontigscaffold4478:307723..307894 -
scaffold3599supercontigscaffold3599:557025..557235 -
Gbar_D02chromosomeGbar_D02:58734528..58734738 -
Gbar_A03chromosomeGbar_A03:94140144..94140315 -
D02chromosomeD02:60037168..60037378 -
A03chromosomeA03:96431983..96432154 -
CM017624.1chromosomeCM017624.1:61079159..61079351 -
CM017612.1chromosomeCM017612.1:95745501..95745672 -
CM017650.1chromosomeCM017650.1:62623026..62623242 -
CM017638.1chromosomeCM017638.1:102693044..102693215 -
CM017702.1chromosomeCM017702.1:59675692..59675902 -
CM017690.1chromosomeCM017690.1:96747195..96747366 -
D02chromosomeD02:63172339..63172534 -
A03chromosomeA03:102161864..102162035 -
Chr03chromosomeChr03:11699537..11699708 +
Chr03chromosomeChr03:11883210..11883381 +
Chr03chromosomeChr03:54305587..54305773 -
B_03chromosomeB_03:11145451..11145622 +
Chr05chromosomeChr05:57059863..57060052 -
chr05chromosomechr05:42876628..42876808 -
Chr_05chromosomeChr_05:37272255..37272435 -
Chr05chromosomeChr05:58813279..58813471 -
Chr05chromosomeChr05:37741510..37741705 -
Chr05chromosomeChr05:31966442..31966634 -
Chr05chromosomeChr05:39160931..39161126 -
E03chromosomeE03:111698167..111698351 -
F03chromosomeF03:100004252..100004423 -
Chr03chromosomeChr03:18931046..18931221 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049909.1DT049909.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A165nau2336View
2TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A53.79nau2336View
3TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A72.6nau2336View
4W10 x TM-1, F2:3 (2015)AD_ch14_Dt.02N/A39.2nau2336View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A92.5nau2336View
6TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A52.6NAU2336-215View
7TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A53.95NAU2336-215View
8TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A59NAU2336-215View
9TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A72.63NAU2336View
10PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A101.5NAU2336View
Sequence
>NAU2336 ID=NAU2336; Name=NAU2336; organism=Gossypium hirsutum; type=genetic_marker; length=196bp
TGGAAAAGGAAGAGGAGAGACAAATGAGTAGGAGCTAAGAAAAATACAGA
GGAGAAATATAAAGGCAGAGATGGAGTAGGATAAGAAGTAGATGATGATG
ATGATGATGATGATGATGGTGATTTTAGCAAAGTACTAAAGGCAAAGAAG
GAAGGCCATGAATGAAGAAGCTGTCTAGAGCTTGACAACTTCAGGG