NAU2092, NAU2092 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2092
Genbank IDDR044179
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044179.1
Source TypeEST
Repeat MotifGAC(8); GAC(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2092_F: GGATGATGAAGGCGAAGAT
Primer 2NAU2092_R: CTTCATCGTCATCACTGTCA
Product Length225
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044179
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A01chromosomeA01:3485868..3486079 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A01chromosomeA01:3184631..3184854 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:2303289..2303506 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018202.1chromosomeCM018202.1:2507563..2507774 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:2334893..2335104 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2475888..2476099 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:58264067..58264278 -Gossypium turneri (D10) genome NSF_v1_a2
CM016614.1chromosomeCM016614.1:3431858..3432066 +Gossypium australe (G2) genome CRI_v1.1
scaffold1463.1supercontigscaffold1463.1:72615..72838 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold3710_D01supercontigscaffold3710_D01:110095..110318 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A01chromosomeA01:2245875..2246086 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:2493702..2493925 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:2781052..2781263 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:2371587..2371810 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:2674879..2675090 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:2488429..2488652 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:2800738..2800949 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:2291136..2291338 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:2752701..2752912 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold7906supercontigscaffold7906:604315..604532 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold12265supercontigscaffold12265:278057..278268 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A01chromosomeGbar_A01:2497066..2497277 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:2432257..2432474 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A01chromosomeA01:2497629..2497840 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:2546006..2546208 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:3016577..3016788 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:2357220..2357422 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:2542738..2542961 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:2681836..2682053 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017688.1chromosomeCM017688.1:2524337..2524536 +Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:2492385..2492608 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:2798215..2798426 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:2516691..2516902 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:2408919..2409130 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr01chromosomeChr01:2310741..2310952 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:2590840..2591054 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:2448188..2448399 +Gossypium thurberi (D1-5) genome CRI_v1
Chr_02chromosomeChr_02:2439914..2440125 +Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:2665337..2665548 +Gossypium davidsonii (D3d-8) genome CRI_v1
E01chromosomeE01:3300565..3300773 +Gossypium stocksii (E1) genome NSF_v1
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044179.1DR044179.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A17.6NAU2092View
2Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A11.5NAU2092View
3Prema x 86-1, RIL (2015)AD_ch01_At.01N/A0NAU2092View
4Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A7.3NAU2092/190tView
Sequence
>NAU2092 ID=NAU2092; Name=NAU2092; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
GGATGATGAAGGCGAAGATGACGACGACGACGACGACGACGACNACAAGA
GAGGAGGATGACGATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCT
GATAGCTGATGACGACNAGGGCGANGATGTTAAAGACGATGATGACGACG
ATGAAGGCGAAGGCGACGGCGACGGCGATGTCGATGACGACGACGACGAC
GATGATGACAGTGATGACGATGAAG