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Marker Overview
| Name | NAU1248 |
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| Genbank ID | BF273634 |
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| Type | SSR |
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| Species | Gossypium arboreum |
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| Germplasm | AKA 8400
AKA 8400
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| Source Type | EST |
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| Repeat Motif | (TCTTCC)3 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU1248_F: AATGTCAGCTGCCTATTTCC |
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| Primer 2 | NAU1248_R: AAGACAGGCGATGTCATCTT |
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| Product Length | 241 |
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| Restriction Enzyme | EcoRI; XhoI |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Image
| File Name | Legend |
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| 45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 23.9 | NAU1248a | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 25 | NAU1248b | View |
| 3 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 107 | nau1248 | View |
| 4 | TM-1 x 3-79, RIL (2012) | AD_ch03_At.03 | N/A | 45.76 | nau1248 | View |
| 5 | HS427-10 x TM-1, F2:3 (2005) | AD_ch03_At.03 | N/A | 46.5 | nau1248 | View |
| 6 | TM-1 x 3-79, RIL (2014) | AD_ch03_At.03 | N/A | 70.6 | nau1248 | View |
| 7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch03_At.03 | N/A | 83.9 | nau1248 | View |
| 8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 61.2 | NAU1248-250 | View |
| 9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 59.29 | NAU1248-250 | View |
| 10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 57.1 | NAU1248-250 | View |
| 11 | TM-1 x 3-79, RIL (2012.v3) | AD_ch03_At.03 | N/A | 70.61 | NAU1248 | View |
Sequence
>NAU1248 ID=NAU1248; Name=NAU1248; organism=Gossypium arboreum; type=genetic_marker; length=241bp
AATGTCAGCTGCCTATTTCCCTCATCTTCCTCTTCCTCTTCCTCCATTTT
GGTTCCTTTTCTAACCGGCATTTCTTACCTTTTTTAACAAGGGAAAACAG
AAACCCTTACTTTAACCCAGAACATCAAGCGGCGCCGGCAGCTCAACTTT
GAAGAAGAACATTCTCATTTTGGCGACATCCTNGCTTTTGCTCTTTATTT
TCTTGCTCTCTTTCGCCATCGAAGATGACATCGCCTGTCTT
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