NAU1248, NAU1248 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1248
Genbank IDBF273634
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCTTCC)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1248_F: AATGTCAGCTGCCTATTTCC
Primer 2NAU1248_R: AAGACAGGCGATGTCATCTT
Product Length241
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF273634
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:96192196..96192436 +
CM018204.1chromosomeCM018204.1:94337022..94337268 +
D5_03chromosomeD5_03:9437054..9437294 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:123150339..123150579 +
D10_03chromosomeD10_03:9342157..9342397 -
CM016616.1chromosomeCM016616.1:15447625..15447874 -
At_chr5chromosomeAt_chr5:43824175..43824415 +
A03chromosomeA03:88973018..88973258 +
Ghir_D02chromosomeGhir_D02:60297469..60297703 +
Ghir_A03chromosomeGhir_A03:100956892..100957132 +
A03chromosomeA03:100015859..100016099 +
A03chromosomeA03:98034409..98034649 +
A03chromosomeA03:93280781..93281021 +
Dt02chromosomeDt02:61005169..61005403 +
Dt02chromosomeDt02:61001851..61002085 +
scaffold4430supercontigscaffold4430:172863..173097 +
scaffold4430supercontigscaffold4430:169545..169779 +
scaffold18229supercontigscaffold18229:22133..22379 -
Gbar_D02chromosomeGbar_D02:58276887..58277121 +
Gbar_A03chromosomeGbar_A03:93529371..93529617 +
A03chromosomeA03:95830857..95831103 +
CM017612.1chromosomeCM017612.1:95153306..95153546 +
CM017638.1chromosomeCM017638.1:102103504..102103744 +
CM017690.1chromosomeCM017690.1:96137788..96138034 +
A03chromosomeA03:101571449..101571689 +
Chr03chromosomeChr03:12319710..12319956 -
Chr03chromosomeChr03:12485813..12486053 -
Chr03chromosomeChr03:53809938..53810178 +
B_03chromosomeB_03:11746727..11746967 -
Chr05chromosomeChr05:56560915..56561155 +
chr05chromosomechr05:42375265..42375964 +
Chr_05chromosomeChr_05:36908112..36908352 +
Chr05chromosomeChr05:58239053..58239299 +
Chr05chromosomeChr05:37405805..37406045 +
Chr05chromosomeChr05:31624461..31624701 +
Chr05chromosomeChr05:38773644..38774043 +
F03chromosomeF03:99312564..99312804 +
Chr03chromosomeChr03:21449233..21449473 -
Chr05chromosomeNAU1248:1..521 .
Chr05:54818067..54818586 +
Chr5chromosomeNAU1248:1..521 .
Chr5:29638836..29639355 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch03_At.03N/A23.9NAU1248aView
2CCRI-36 x Hai-7124, F2 (2007)AD_ch03_At.03N/A25NAU1248bView
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A107nau1248View
4TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A45.76nau1248View
5HS427-10 x TM-1, F2:3 (2005)AD_ch03_At.03N/A46.5nau1248View
6TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A70.6nau1248View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A83.9nau1248View
8TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A61.2NAU1248-250View
9TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A59.29NAU1248-250View
10TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A57.1NAU1248-250View
11TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A70.61NAU1248View
Sequence
>NAU1248 ID=NAU1248; Name=NAU1248; organism=Gossypium arboreum; type=genetic_marker; length=241bp
AATGTCAGCTGCCTATTTCCCTCATCTTCCTCTTCCTCTTCCTCCATTTT
GGTTCCTTTTCTAACCGGCATTTCTTACCTTTTTTAACAAGGGAAAACAG
AAACCCTTACTTTAACCCAGAACATCAAGCGGCGCCGGCAGCTCAACTTT
GAAGAAGAACATTCTCATTTTGGCGACATCCTNGCTTTTGCTCTTTATTT
TCTTGCTCTCTTTCGCCATCGAAGATGACATCGCCTGTCTT