NAU1269, NAU1269 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1269
Genbank IDBE055161
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GCTCAG)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1269_F: TACCTGAAACCCAAAATGGT
Primer 2NAU1269_R: ACGCTGTTATAGGGCTCATC
Product Length154
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBE055161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15288820..15288973 +
CM017614.1chromosomeCM017614.1:15251886..15252039 +
CM017640.1chromosomeCM017640.1:15480134..15480287 +
Chr05chromosomeChr05:16360592..16360745 +
Chr05chromosomeChr05:15130840..15130993 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A0.4NAU1269View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch19_Dt.05N/A0.1NAU1269View
3Yumian-1 x T586, RIL (2006)AD_ch05_At.05N/A9.8NAU1269View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A67.6NAU1269View
5PD6992 x SM3, F2:3 (2005)AD_ch19_Dt.05N/A0.8NAU1269View
6Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A55.1NAU1269View
7Baimian 1 x TM-1 , F2:3 (2014)AD_ch19_Dt.05N/A26.8NAU1269View
8GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A45.7NAU1269View
9GX1135 x GX100-2, RIL (2015)AD_ch19_Dt.05N/A12.1NAU1269View
10GX1135 x GX100-2, RIL (2016)AD_ch19_Dt.05N/A12.1NAU1269View
110-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A15.4NAU1269View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A83.5NAU1269View
13CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A131.2NAU1269View
14CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A53.1NAU1269View
15Yumian-1 x T586, RIL (2009)AD_ch05_At.05N/A9.8NAU1269/150yView
16CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A98.83NAU1269View
Sequence
>NAU1269 ID=NAU1269; Name=NAU1269; organism=Gossypium arboreum; type=genetic_marker; length=154bp
TACCTGAAACCCAAAATGGTTATGGCCTTTACGGCCACGAGACAAGCTCA
GGCTCAGGCTCAGGCTGAAGCCGGGCCAGGTGGACCACCAGAGAAACCTA
TGAACCCTATGTGACCCCTGTGGGATGGCACCCTGATGAGCCCTATAACA
GCGT