NAU1141, NAU1141 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1141
Genbank IDBG447486
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCCATC)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1141_F: CCCCTCTCTCTGTTTCTCAA
Primer 2NAU1141_R: AAGGGGTTTGAAGGGTTATC
Product Length210
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Germplasm
Stock NameType
AKA 8400cultivar
AKA 8400cultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG447486
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
NAU1141_FNAU1141_FGossypium arboreumprimer
NAU1141_RNAU1141_RGossypium arboreumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
NAU1141NAU1141Gossypium arboreummarker_locus
NAU1141-200NAU1141-200Gossypium arboreummarker_locus
NAU1141/200t(C13)NAU1141/200t(C13)Gossypium arboreummarker_locus


Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Agricultural University of Nanjing
Address:Weigang 1#, Nanjing, Jiangsu 210095
Country:China
Email:cotton@njau.edu.cn
Phone:+86 25 84395307
Fax:+86 25 84395307
Keywords:Genetics and Breeding
Last update:18-Mar-2011
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:39367548..39367762 +
A13chromosomeA13:72562260..72562475 +
CM018214.1chromosomeCM018214.1:77806779..77806982 +
Chr13chromosomeChr13:133855602..133855811 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:89104502..89104711 +
D10_13chromosomeD10_13:36951495..36951704 +
CM016626.1chromosomeCM016626.1:113141412..113141621 +
Dt_chr9chromosomeDt_chr9:18844895..18845110 +
Dt_chr13chromosomeDt_chr13:26615431..26615645 +
At_chr12chromosomeAt_chr12:78981175..78981389 +
D13chromosomeD13:35330822..35331036 +
A13chromosomeA13:49726137..49726352 +
Ghir_D13chromosomeGhir_D13:38764985..38765199 +
Ghir_A13chromosomeGhir_A13:76854166..76854381 +
D13chromosomeD13:40120425..40120639 +
A13chromosomeA13:79900541..79900756 +
D13chromosomeD13:38902942..38903156 +
A13chromosomeA13:77795847..77796062 +
D13chromosomeD13:35831807..35832021 +
A13chromosomeA13:76478820..76479035 +
At13chromosomeAt13:53478189..53478392 +
At13chromosomeAt13:53473809..53474012 +
scaffold1834supercontigscaffold1834:16442..16645 +
scaffold1834supercontigscaffold1834:12062..12265 +
scaffold26288supercontigscaffold26288:250..453 -
Gbar_D13chromosomeGbar_D13:35440119..35440322 +
Gbar_A13chromosomeGbar_A13:78927965..78928168 +
A13chromosomeA13:82141585..82141788 +
CM017635.1chromosomeCM017635.1:36986104..36986325 +
CM017622.1chromosomeCM017622.1:79546057..79546278 +
CM017648.1chromosomeCM017648.1:83167337..83167552 +
CM017700.1chromosomeCM017700.1:80102048..80102257 +
Sequence
>NAU1141 ID=NAU1141|Name=NAU1141|organism=Gossypium arboreum|type=genetic_marker|length=210bp
CCCCTCTCTCTGTTTCTCAACTCATATCCCATACCATGAACATAACCTAT
ATGTTACTTTCCAACCTTTTTCTTCCATCTCCATCTCCATCTTGGTTCTG
CAATGCTCCCCAACTTTCCATGGCTTCCTTCACACCCAATCTAGAACCTG
GCCATGACACCTGTCTTCAGTTCAAGCCCAAGAAACCCAGGATAACCCTT
CAAACCCCTT
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr18N/AAD_chr.1829.1NAU1141
2AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr13N/AAD_chr.13100NAU1141
3AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr18N/AAD_chr.18165NAU1141
4Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr13N/AAD_chr.134.7NAU1141
5Yumian-1 x T586, RIL (2006)YT-RIL_chr13-2N/AAD_chr.1320NAU1141
6H18 x 3-79, F2 (2005)H18P379-F2_chr18N/AAD_chr.1877.1NAU1141
7H18 x TM-1, F2 (2005)H18TM1-F2_chr13N/AAD_chr.1398.1NAU1141
8Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.1365.1NAU1141
9TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr13N/AAD_chr.1388.2NAU1141-200
10TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr13/A13N/AAD_chr.1331.8NAU1141-200
11Yumian-1 x T586, RIL (2009)YT-RIL_chr13-2N/AAD_chr.137.8NAU1141/200t(C13)