NAU1141, NAU1141 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1141
Genbank IDBG447486
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCCATC)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1141_F: CCCCTCTCTCTGTTTCTCAA
Primer 2NAU1141_R: AAGGGGTTTGAAGGGTTATC
Product Length210
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG447486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:39367548..39367762 +
A13chromosomeA13:72562260..72562475 +
CM018214.1chromosomeCM018214.1:77806779..77806982 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:89104502..89104711 +
D10_13chromosomeD10_13:36951495..36951704 +
CM016626.1chromosomeCM016626.1:113141412..113141621 +
Dt_chr9chromosomeDt_chr9:18844895..18845110 +
Dt_chr13chromosomeDt_chr13:26615431..26615645 +
At_chr12chromosomeAt_chr12:78981175..78981389 +
D13chromosomeD13:35330822..35331036 +
A13chromosomeA13:49726137..49726352 +
Ghir_D13chromosomeGhir_D13:38764985..38765199 +
Ghir_A13chromosomeGhir_A13:76854166..76854381 +
D13chromosomeD13:40120425..40120639 +
A13chromosomeA13:79900541..79900756 +
D13chromosomeD13:38902942..38903156 +
A13chromosomeA13:77795847..77796062 +
D13chromosomeD13:35831807..35832021 +
A13chromosomeA13:76478820..76479035 +
At13chromosomeAt13:53478189..53478392 +
At13chromosomeAt13:53473809..53474012 +
scaffold1834supercontigscaffold1834:16442..16645 +
scaffold1834supercontigscaffold1834:12062..12265 +
scaffold26288supercontigscaffold26288:250..453 -
Gbar_D13chromosomeGbar_D13:35440119..35440322 +
Gbar_A13chromosomeGbar_A13:78927965..78928168 +
A13chromosomeA13:82141585..82141788 +
CM017635.1chromosomeCM017635.1:36986104..36986325 +
CM017622.1chromosomeCM017622.1:79546057..79546278 +
CM017648.1chromosomeCM017648.1:83167337..83167552 +
CM017700.1chromosomeCM017700.1:80102048..80102257 +
D13chromosomeD13:39864544..39864758 +
A13chromosomeA13:80012005..80012220 +
Chr13chromosomeChr13:87465370..87465579 +
B_13chromosomeB_13:28822154..28822372 +
Chr13chromosomeChr13:35898300..35898515 +
Chr_13chromosomeChr_13:24575754..24576061 +
Chr13chromosomeChr13:38416164..38416373 +
Chr13chromosomeChr13:24753965..24754623 +
Chr13chromosomeChr13:24155559..24155902 +
E13chromosomeE13:77853564..77853773 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch18_Dt.13N/A29.1NAU1141View
2AD-genome wide Reference Map (2009)AD_ch13_At.13N/A100NAU1141View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A165NAU1141View
4Yumian-1 x T586, F2:7 (2008)AD_ch13_At.13N/A4.7NAU1141View
5Yumian-1 x T586, RIL (2006)AD_ch13_At.13N/A20NAU1141View
6H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A77.1NAU1141View
7H18 x TM-1, F2 (2005)AD_ch13_At.13N/A98.1NAU1141View
8Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A65.1NAU1141View
9TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A88.2NAU1141-200View
10TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A31.8NAU1141-200View
11TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A50.4NAU1141-200View
12Yumian-1 x T586, RIL (2009)AD_ch13_At.13N/A7.8NAU1141/200t(C13)View
Sequence
>NAU1141 ID=NAU1141; Name=NAU1141; organism=Gossypium arboreum; type=genetic_marker; length=210bp
CCCCTCTCTCTGTTTCTCAACTCATATCCCATACCATGAACATAACCTAT
ATGTTACTTTCCAACCTTTTTCTTCCATCTCCATCTCCATCTTGGTTCTG
CAATGCTCCCCAACTTTCCATGGCTTCCTTCACACCCAATCTAGAACCTG
GCCATGACACCTGTCTTCAGTTCAAGCCCAAGAAACCCAGGATAACCCTT
CAAACCCCTT