MUSB0823, MUSB0823 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0823
Genbank IDDX550944
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX550944.2
Source TypeEST
Repeat Motif(TCA)4
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0823_F: GCTACAAGCTATCTGCCAGAGC
Primer 2MUSB0823_R: TCCTGCCAATGACTCATCGGA
Product Length220
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0823
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX550944
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A11chromosomeA11:44132435..44132654 +
D11chromosomeD11:37061405..37061624 -
CM018212.1chromosomeCM018212.1:41029261..41029480 +
CM018225.1chromosomeCM018225.1:35106444..35106669 -
D5_11chromosomeD5_11:31896526..31896751 +
KI_11chromosomeKI_11:22915267..22915492 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:64136309..64136527 +
D10_11chromosomeD10_11:34824730..34824955 -
CM016624.1chromosomeCM016624.1:72896310..72896529 +
Dt_chr7chromosomeDt_chr7:43085169..43085388 +
At_chr1chromosomeAt_chr1:70298225..70298444 -
A11chromosomeA11:40617244..40617463 +
D11chromosomeD11:35488165..35488384 -
Ghir_A11chromosomeGhir_A11:43251213..43251432 +
Ghir_D11chromosomeGhir_D11:36299824..36300043 -
A11chromosomeA11:42220601..42220820 +
D11chromosomeD11:35373982..35374201 -
A11chromosomeA11:42941036..42941255 +
D11chromosomeD11:36364844..36365063 -
A11chromosomeA11:43155443..43155662 +
D11chromosomeD11:35904024..35904243 -
At11chromosomeAt11:44403683..44403902 +
scaffold9450supercontigscaffold9450:261062..261281 +
scaffold474supercontigscaffold474:12913..13138 +
Gbar_A11chromosomeGbar_A11:40498436..40498655 +
Gbar_D11chromosomeGbar_D11:35426045..35426270 -
A11chromosomeA11:41025332..41025551 +
D11chromosomeD11:35239701..35239926 -
CM017620.1chromosomeCM017620.1:43118844..43119063 +
CM017633.1chromosomeCM017633.1:35444299..35444524 -
CM017646.1chromosomeCM017646.1:45269895..45270114 +
CM017659.1chromosomeCM017659.1:36199678..36199903 -
CM017698.1chromosomeCM017698.1:41570360..41570579 +
CM017711.1chromosomeCM017711.1:35299524..35299755 -
A11chromosomeA11:43936150..43936369 +
D11chromosomeD11:36699893..36700112 -
Chr11chromosomeChr11:65423495..65423714 +
Chr11chromosomeChr11:58761865..58762084 -
Chr11chromosomeChr11:29897223..29897448 +
B_11chromosomeB_11:49767305..49767524 +
Chr07chromosomeChr07:35614072..35614297 -
chr07chromosomechr07:28689834..28690053 -
Chr_07chromosomeChr_07:27656896..27657121 -
Chr07chromosomeChr07:35509946..35510171 -
Chr07chromosomeChr07:24498265..24498478 -
Chr07chromosomeChr07:21784234..21784453 -
Chr07chromosomeChr07:26053508..26053727 -
E11chromosomeE11:52248348..52248566 -
F11chromosomeF11:46339723..46339942 -
Chr11chromosomeChr11:46647736..46647955 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX550944.2DX550944.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A155.32MUSB0823View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A131MUSB0823View
3TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A27.7MUSB0823View
4AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A236MUSB0823View
5TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A89.75MUSB0823View
6TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A92.8MUSB0823View
7Emian-22 x 3-79, BC1 (2015)AD_ch21_Dt.11N/A150.6MUSB0823View
8GB713 x Nem-X, F2 (2011)AD_ch21_Dt.11N/A146.6MUSB0823_225DView
9TM-1 x 3-79, RIL (2011)AD_ch11_At.11N/A36.7MUSB0823_227/235View
10TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A92.77MUSB0823View
Sequence
>MUSB0823 ID=MUSB0823; Name=MUSB0823; organism=Gossypium hirsutum; type=genetic_marker; length=220bp
GCTACAAGCTATCTGCCAGAGCTTGCAGAAACAAGAGAATTCAGGAAAGG
CCTGTTCTGTTCCCGATTCAAATCCCAAGGTTGAGTTTGATTACCCTGTG
AAGCGTGAGGAGTTTGATCAGTCTCCAAGATTTGCTAGTCCTAAAGTTGA
GATGAACTCGCTGTCATCATCATCATCCTCACCCTCATCCCCGGATTTAT
CCGATGAGTCATTGGCAGGA