MUSB0760, MUSB0760 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0760
Genbank IDDX823046
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823046.2
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0760_F: ATCAGTCAAATTACGGTCTTGG
Primer 2MUSB0760_R: AGAAAGGACCAACCCAAAGG
Product Length327
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0760
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823046
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:819855..820182 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A01chromosomeA01:949681..950007 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:785777..786104 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018202.1chromosomeCM018202.1:714242..714568 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:772645..772971 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:781422..781748 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016614.1chromosomeCM016614.1:1116856..1117176 +Gossypium australe (G2) genome CRI_v1.1
scaffold280.1supercontigscaffold280.1:768729..769056 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold944.1supercontigscaffold944.1:291445..291771 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:765175..765502 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A01chromosomeA01:860332..860658 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:806134..806461 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:892845..893171 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:770869..771196 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:855016..855342 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:782467..782794 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:910186..910512 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:597540..597867 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:888356..888682 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold35927supercontigscaffold35927:35436..35762 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold26905supercontigscaffold26905:52790..53117 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01chromosomeGbar_D01:817307..817634 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A01chromosomeGbar_A01:688752..689078 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:782908..783235 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A01chromosomeA01:788748..789074 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:850742..851069 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:840445..840770 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:825166..825493 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:742117..742443 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:828141..828468 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017688.1chromosomeCM017688.1:826913..827239 +Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:743609..743936 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:914081..914407 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:700132..700458 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:714299..714625 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr01chromosomeChr01:751377..751704 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:811342..811667 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:982246..982573 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:663324..663809 +Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:610167..610493 +Gossypium gossypioides (D6) genome ISU_v1
E01chromosomeE01:893422..893748 +Gossypium stocksii (E1) genome NSF_v1
F01chromosomeF01:721613..721938 +Gossypium longicalyx (F1) genome NSF_v1
Chr01chromosomeChr01:199073232..199073558 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823046.2DX823046.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch13_At.13N/A29.9MUSB0760aView
2Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A4.4MUSB0760aView
3Yumian-1 x T586, RIL (2006)AD_ch25_Dt.06N/A23.6MUSB0760bView
4Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A67.6MUSB0760bView
5Yumian-1 x T586, RIL (2009)AD_ch13_At.13N/A18.8MUSB0760/650yView
6Yumian-1 x T586, RIL (2009)AD_ch15_Dt.01N/A28.3MUSB0760/370tView
Sequence
>MUSB0760 ID=MUSB0760; Name=MUSB0760; organism=Gossypium hirsutum; type=genetic_marker; length=327bp
ATCAGTCAAATTACGGTCTTGGTCCTTCTTATTGTACTAAAATTTGATAT
TTAGTCTTTATAATTTATTTTGATATAATTTGATCTTTTTACTTTTATAA
TATTGTTGGTTAGTTCAAATCATTACCTATTCCGGTTAAAACATTATGAT
AAATATTTTATTGGGAATCAAGGTAAATATATATATTCAACTGACCAAAG
CTAAAAATTTAATGTTAAAAGGTAAAACTTAAATTATAAATTTTTAGAAG
GGGCCAAAAATGAAATTTAACTATTTTATCCTGGTGCCAAATCCAAAGCC
AGTAGCCCCTTTGGGTTGGTCCTTTCT