MUSB0756, MUSB0756 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0756
Genbank IDDX823042
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823042.2
Source TypeEST
Repeat Motif(TATT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0756_F: GCAACGTTATGACAGCTTGG
Primer 2MUSB0756_R: ACCCCACATCAATAGGATCG
Product Length285
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0756
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823042
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:86989499..86989783 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:86898003..86898286 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:90384521..90384804 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr7chromosomeAt_chr7:28294383..28294667 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:71347069..71347353 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:90750862..90751146 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:89875644..89875928 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:89854472..89854756 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:86284296..86284580 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1060supercontigscaffold1060:55264..55547 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:86040217..86040500 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:88241859..88242142 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:90000012..90000295 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:92796509..92796792 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:88156016..88156299 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:91862811..91863095 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:94982321..94982604 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823042.2DX823042.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A25.3MUSB0756View
2CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A76.9MUSB0756View
Sequence
>MUSB0756 ID=MUSB0756; Name=MUSB0756; organism=Gossypium hirsutum; type=genetic_marker; length=285bp
GCAACGTTATGACAGCTTGGCGACTCCACTGAGGACATTAGTGAGTTGAC
TTACTTAGAATTAAAAGTTAGATTTTTTAGTATTTGTGCAAATTGTATTT
ATTTATTTGTGCATTAGTTTGTTTAATTGTCTAATGTCATTTTAAATTGT
TGAATATGTGTTAAATATTGATTTATTTGTTTATTTCATTTACTTATCCC
TTTTTAATATGAATGACAATGCGTTTGCTTATTCTTTTATCGATAAAATT
AATTAATGTGCATGTCGATCCTATTGATGTGGGGT