MUSB0590, MUSB0590 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0590
Genbank IDDX822895
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822895.1
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0590_F: TTGGGGCCATTCTTTTTATC
Primer 2MUSB0590_R: GATTGGATGTTGGCAATGAC
Product Length331
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0590
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822895
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:23125512..23125842 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:23515551..23515885 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:27604180..27604510 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:21802173..21802503 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold12703supercontigscaffold12703:2567..2897 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:21656002..21656332 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:21673842..21674171 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:22214561..22214890 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:22079452..22079782 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017610.1chromosomeCM017610.1:22772946..22773276 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:21941096..21941429 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A01chromosomeA01:22366665..22366995 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:22449467..22449801 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:23828356..23828692 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F01chromosomeF01:19324657..19324989 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822895.1DX822895.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_ch01_At.01N/A21.8MUSB0590View
2TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A56.05MUSB0590View
3TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A88.3MUSB0590View
4TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A88.33MUSB0590View
5PD 94042 x (AD)4-08, F2 (2016)AD_ch01_At.01N/A67.6MUSB0590View
Sequence
>MUSB0590 ID=MUSB0590; Name=MUSB0590; organism=Gossypium hirsutum; type=genetic_marker; length=331bp
TTGGGGCCATTCTTTTTATCTTATTTTCTTTCCTATTTTTCTACCCAATT
GAACAGTTAAACCGTTAAGGACTGTTATAAGAAAATATATATATGTACAT
CAGATAGCTGATTCGAATATTTTGCCAGACATGAAATGAAACCAAAACGA
ATATTAAAACAAAAAAAAAATGAAATTAAGAAAAGAAAATTAAAAAGGTT
AAAACAAACAAAGTTAGCTTCTTTTTTTGTTTGTGTTTGGTGAAAGACCT
TTGGTGAACAAAAAAAGCTAAAAAGAAAGAAAAAAAAATATACTTGTGCT
GGTTTCCATTGGTCATTGCCAACATCCAATC