MUCS0620, MUCS0620 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0620
AliasMUCS620
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTTA(2)TA(6)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS620_F: CGAAGATGGGAAGAGAAAGG
Primer 2MUCS620_R: CAAAAGCTAGCAACATTACAACTCC
Product Length248
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A02chromosomeA02:46573165..46573409 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018203.1chromosomeCM018203.1:44659907..44660248 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_2_4chromosomeKI_2_4:30970941..30971179 +Gossypioides kirkii genome ISU_v3
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:81586657..81586903 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr3chromosomeAt_chr3:91971993..91972237 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A02chromosomeA02:43561753..43561997 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A02chromosomeGhir_A02:47500935..47501179 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A02chromosomeA02:45725904..45726148 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A02chromosomeA02:46077895..46078139 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A02chromosomeA02:45529120..45529364 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold11147supercontigscaffold11147:4093..4434 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A02chromosomeGbar_A02:45158647..45158988 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A02chromosomeA02:45617496..45617837 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017611.1chromosomeCM017611.1:44941406..44941743 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017637.1chromosomeCM017637.1:48139290..48139626 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017689.1chromosomeCM017689.1:45432367..45432706 -Gossypium darwinii (AD5) genome HGS_v1.1
A02chromosomeA02:46994426..46994670 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02chromosomeChr02:30407194..30407440 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:87490057..87490303 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch02_At.02N/A97mucs0620View
2LMY22 x LY343, RIL (2016)chr.2N/A35.5mucs0620View
3TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A47.6MUCS620View
4TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A59.7MUCS620View
5TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A60.4MUCS620View
6TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A60.38MUCS620View
Sequence
>MUCS0620 ID=MUCS0620; Name=MUCS0620; organism=Gossypium arboreum; type=genetic_marker; length=248bp
CGAAGATGGGAAGAGAAAGGAGTGAAGAGAGATTTTAAAAAAAGGGAATG
CTCATCCTCTTTCTCTTTTACTTCATTTGTTATTATATATATATATATGT
AAGAGACAAGATTGAGAAGTTAGCTAAATGACTTTTCATACAGATTGCAA
GGAGTCTTGTTTTTTTTTATATGTACTTCAGAGCAGCTGATTTCCTTCTT
TTTTTTTTTTTTTAATCCTTTTTGGAGTTGTAATGTTGCTAGCTTTTG