JESPR0292, JESPR0292 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0292
AliasJESPR292
Genbank IDAF351530
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351530.1
Source Typegenomic
Repeat Motif(CTT)7
Primer 1JESPR0292_F: GCTTGCAATCTCCTACACC
Primer 2JESPR0292_R: GAATATGTTTCATAGAATGGC
PolymorphismP_ JESPR0292
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:4604149..4604328 -
A07chromosomeA07:4520011..4520187 -
CM018221.1chromosomeCM018221.1:4283530..4283712 -
CM018208.1chromosomeCM018208.1:4868537..4868722 -
D5_07chromosomeD5_07:4228678..4228854 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:4913996..4914178 -
D10_07chromosomeD10_07:49575694..49575867 +
scaffold787.1supercontigscaffold787.1:365081..365257 +
Dt_chr1chromosomeDt_chr1:41632402..41632581 +
D07chromosomeD07:4072514..4072693 -
A07chromosomeA07:4015861..4016037 -
Ghir_D07chromosomeGhir_D07:4540152..4540331 -
Ghir_A07chromosomeGhir_A07:4882138..4882314 -
D07chromosomeD07:4368743..4368922 -
A07chromosomeA07:4559252..4559428 -
D07chromosomeD07:4493445..4493624 -
A07chromosomeA07:4840237..4840413 -
D07chromosomeD07:4320839..4321012 -
A07chromosomeA07:4867258..4867434 -
scaffold9524supercontigscaffold9524:96286..96462 +
Gbar_D07chromosomeGbar_D07:4518230..4518412 -
Gbar_A07chromosomeGbar_A07:4831748..4831933 -
D07chromosomeD07:4461577..4461747 -
A07chromosomeA07:4730878..4731063 -
CM017629.1chromosomeCM017629.1:4729154..4729327 -
CM017616.1chromosomeCM017616.1:4648763..4648939 -
CM017655.1chromosomeCM017655.1:4604559..4604729 -
CM017642.1chromosomeCM017642.1:4845456..4845632 -
CM017707.1chromosomeCM017707.1:4511600..4511782 -
CM017694.1chromosomeCM017694.1:4819821..4820009 -
D07chromosomeD07:4590999..4591178 -
A07chromosomeA07:4872262..4872438 -
Chr07chromosomeChr07:4925691..4925876 -
Chr07chromosomeChr07:4917116..4917295 -
Chr07chromosomeChr07:49303679..49303855 +
B_07chromosomeB_07:5096047..5096223 -
Chr01chromosomeChr01:4412041..4412214 -
Chr_01chromosomeChr_01:4416712..4416885 -
Chr01chromosomeChr01:4421710..4421889 -
Chr01chromosomeChr01:3405645..3405830 -
Chr01chromosomeChr01:3167452..3167619 -
Chr01chromosomeChr01:3848093..3848272 -
E07chromosomeE07:88579395..88579582 +
F07chromosomeF07:4309734..4309910 -
Chr07chromosomeChr07:6781960..6782133 -
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351530.1AF351530.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch16_Dt.07N/A34.4JESPR292View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A107.42JESPR292View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A181.8JESPR292View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A103.33JESPR292View
5TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A23.01JESPR292View
6Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A13.3JESPR292View
7TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A102.5JESPR292View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A109.5JESPR292View
9901-001 x sGK156, F2 (2019)AD_ch16_Dt.07N/A54.92JESPR292View
10Monsanto SSR Bin Map, (2009)AD_ch16_Dt.07N/A161JESPR292View
11CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A57.5JESP292View
12HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch16_Dt.07N/A18JESPR292-178View
13AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A47jespr0292View
14TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A35.99JESPR292-175View
15H16 x T586, F2 (2009)AD_ch16_Dt.07N/A36JESPR292-175View
16TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A95.6JESPR292-175View
17TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A102.52JESPR292View
Sequence
>JESPR0292 ID=JESPR0292; Name=JESPR0292; organism=Gossypium hirsutum; type=genetic_marker; length=174bp
GCTTGCAATCTCCTACACCTTCACCTCCCTTTCCTTTTCTTTCCCATCTC
TCTTTACTCAACTCNCTTCTCTGCTTCTTCCTTTCCTTTCTACCCATGCN
TACTCTTCTTCTTCTTCTTCTTCTTCACTGTGTTGTTTTCNTGCNATTAT
ATTGCCATTCTATGAAACATATTC