JESPR0183, JESPR0183 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0183
AliasJESPR183
Genbank IDAF351421
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351421.1
Source Typegenomic
Repeat Motif(CTT)6
Primer 1JESPR0183_F: CATTTGTTTCACTTCAGGTCC
Primer 2JESPR0183_R: CATGCTACCATTGCTTCTCATC
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351421
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:3158877..3158952 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:2275260..2275335 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:2454081..2454156 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:2317808..2317883 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:2368802..2368877 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:2286641..2286713 -Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2850777..2850849 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:140447697..140447772 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:22653723..22653798 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold72.1supercontigscaffold72.1:1018840..1018915 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold61996supercontigscaffold61996:568..643 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:2540116..2540191 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:1861622..1861697 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:2585567..2585642 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:2657897..2657972 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:2434014..2434089 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:2431199..2431274 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:2526167..2526242 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:2649550..2649625 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:2590395..2590470 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:2255194..2255269 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14130supercontigscaffold14130:62443..62518 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14130supercontigscaffold14130:48515..48590 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:2458831..2458906 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:2561897..2561972 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:2390037..2390112 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:2416908..2416983 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:2546106..2546181 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:2440074..2440149 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:2590280..2590355 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:2573616..2573691 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:2437305..2437380 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:2523254..2523329 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:2543511..2543586 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:2701876..2701951 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:2802762..2802834 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:2714044..2714116 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:2353089..2353164 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:2975714..2975783 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:2474872..2474947 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:2399928..2399997 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr04_3177289chromosomeChr04_3177289:7958..8036 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:2533213..2533288 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:2561141..2561213 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04_6375290chromosomeChr04_6375290:11280..11355 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:3685704..3685776 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:2183117..2183191 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:195434869..195434944 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351421.1AF351421.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A53.9JESP183View
2Handan-208 x Pima-90, F2:3 (2007)AD_ch08_At.08N/A305.1JESPR183b*View
3AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A47jespr0183View
4Yumian-1 x T586, RIL (2006)AD_ch24_Dt.08N/A68.4JESPR183View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A0JESPR183View
6Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A2.6JESPR183View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch04_At.04N/A0JESPR183View
8Yumian-1 x T586, RIL (2009)AD_ch24_Dt.08N/A60.4JESPR183/85y(C8)View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A11.72JESPR183View
Sequence
>JESPR0183 ID=JESPR0183; Name=JESPR0183; organism=Gossypium hirsutum; type=genetic_marker; length=76bp
CATTTGTTTCACTTCAGGTCCTTCTTCTTCTTCTTCTTCTTTTGGTAGGA
GATTGATGAGAAGCAATGGTAGCATG