JESPR0128, JESPR0128 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0128
AliasJESPR128
Genbank IDAF351366
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351366.1
Source Typegenomic
Repeat Motif(GT)10
Primer 1JESPR0128_F: CTGAAAAATCTGCATTTCCG
Primer 2JESPR0128_R: CTCCTAGATTTTGCTCTCCTGTC
PolymorphismP_ JESPR0128
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:19007756..19007854 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:23976842..23976936 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:18271400..18271492 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:23960171..23960265 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:17229576..17229672 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:23976186..23976280 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016620.1chromosomeCM016620.1:55223029..55223125 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4213.1supercontigscaffold4213.1:59892..59986 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:52551777..52551875 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:18341916..18342014 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:23020931..23021025 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:18749315..18749413 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:24289336..24289430 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:17978056..17978154 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:23278567..23278661 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:18721348..18721446 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:24349632..24349726 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:18274415..18274513 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:24083586..24083680 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18874supercontigscaffold18874:142431..142525 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18874supercontigscaffold18874:139523..139617 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13274supercontigscaffold13274:74619..74711 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13274supercontigscaffold13274:79055..79149 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:18712094..18712186 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:23916818..23916912 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:18329628..18329720 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:23905842..23905936 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:18692252..18692352 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:18945134..18945242 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:23953625..23953719 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:18628663..18628755 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:24255234..24255328 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:18931288..18931386 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:24545225..24545319 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:24970380..24970474 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:25574997..25575091 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:35685396..35685494 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:18321371..18321471 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:15466347..15466591 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:18140967..18141071 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:11616873..11616979 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:14104302..14104410 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:65740421..65740527 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeChr07:47250139..47250411 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351366.1AF351366.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Acala-44 x Pima S-7, F2 (2004)AD_chUN/A38.9JESPR128View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A66.48JESPR128View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A112.7JESPR128View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A64.16JESPR128View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch16_Dt.07N/A96.2JESPR128View
6Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A47.8JESPR128View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A81.7JESPR128View
8CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A42.5JESP128View
9Yumian-1 x T586, RIL (2006)AD_ch16_Dt.07N/A0JESP128View
10AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A127jespr0128View
11TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A71.42JESPR128-100View
12H16 x T586, F2 (2009)AD_ch16_Dt.07N/A71.7JESPR128-100View
13TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A59.4JESPR128-100View
14Yumian-1 x T586, RIL (2009)AD_ch16_Dt.07N/A70JESPR128/100y(C16)View
Sequence
>JESPR0128 ID=JESPR0128; Name=JESPR0128; organism=Gossypium hirsutum; type=genetic_marker; length=99bp
CTGAAAAATCTGCATTTCCGCCAAAGCATTTGCTACAGANTTCCTGATAT
GTGTGTGTGTGTGTGTGTGTAAAATTGACAGGAGAGCAAAATCTAGGAG