HAU2102, HAU2102 (genetic_marker) gossypium spp

Marker Overview
NameHAU2102
Genbank IDES830252
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAC)6
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU2102_F: GTGGCGAACCGGAAGAGGAA
Primer 2HAU2102_R: CTCGCCCTCGTCGTCATCAG
Product Length164
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEX164726
DB:genbankES830252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:3485822..3485985 +
A01chromosomeA01:3184591..3184754 +
CM018215.1chromosomeCM018215.1:2303249..2303412 +
CM018202.1chromosomeCM018202.1:2507517..2507683 +
D5_01chromosomeD5_01:2334847..2335016 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2475842..2476008 +
D10_01chromosomeD10_01:58264155..58264324 -
CM016614.1chromosomeCM016614.1:3431816..3431978 +
scaffold1463.1supercontigscaffold1463.1:72715..72878 -
scaffold3710_D01supercontigscaffold3710_D01:110055..110218 +
A01chromosomeA01:2245829..2245992 +
Ghir_D01chromosomeGhir_D01:2493662..2493825 +
Ghir_A01chromosomeGhir_A01:2781006..2781169 +
D01chromosomeD01:2371547..2371710 +
A01chromosomeA01:2674833..2674996 +
D01chromosomeD01:2488389..2488552 +
A01chromosomeA01:2800692..2800855 +
D01chromosomeD01:2291087..2291250 +
A01chromosomeA01:2752655..2752818 +
scaffold7906supercontigscaffold7906:604275..604438 +
scaffold12265supercontigscaffold12265:278148..278314 -
Gbar_D01chromosomeGbar_D01:2534718..2534881 +
Gbar_A01chromosomeGbar_A01:2497020..2497186 +
D01chromosomeD01:2432217..2432380 +
A01chromosomeA01:2497583..2497749 +
CM017623.1chromosomeCM017623.1:2545957..2546120 +
CM017610.1chromosomeCM017610.1:3016531..3016694 +
CM017649.1chromosomeCM017649.1:2357171..2357334 +
CM017636.1chromosomeCM017636.1:2542692..2542864 +
CM017701.1chromosomeCM017701.1:2681796..2681959 +
CM017688.1chromosomeCM017688.1:2524291..2524445 +
D01chromosomeD01:2492345..2492508 +
A01chromosomeA01:2798169..2798332 +
Chr01chromosomeChr01:2516645..2516811 +
Chr01chromosomeChr01:2408873..2409039 +
Chr01chromosomeChr01:2310695..2310864 +
B_01chromosomeB_01:2590794..2590966 +
Chr02chromosomeChr02:2448142..2448311 +
chr02chromosomechr02:2276345..2276638 +
Chr_02chromosomeChr_02:2439868..2440037 +
Chr02chromosomeChr02:2665291..2665460 +
Chr02chromosomeChr02:1851915..1852198 +
Chr02chromosomeChr02:2237059..2237303 +
E01chromosomeE01:3300519..3300685 +
F01chromosomeF01:2349954..2350129 +
Chr01chromosomeChr01:196904029..196904195 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A78.5HAU2102View
2Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A6.4HAU2102View
3DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A93.5HAU2102View
4DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A93.5HAU2102View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A136.5HAU2102View
6DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A31.65HAU2102aView
7DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A31.65HAU2102aView
8CCRI-36 x G2005, RIL (2016)AD_ch15_Dt.01N/A2.6HAU2102aView
9DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A28.16HAU2102bView
10DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A28.16HAU2102bView
Sequence
>HAU2102 ID=HAU2102; Name=HAU2102; organism=Gossypium spp.; type=genetic_marker; length=164bp
GTGGCGAACCGGAAGAGGAAGACGACGATGACGACGACGAGGATGAGGAT
GATGAAGGCGAAGATGACGACGACGACGACGACGAAGGAGAGGAGGATGA
CGATGTGCAGGTTCTTCACTCATCCGGTCCTCCTGTCCTGATAGCTGATG
ACGACGAGGGCGAG