HAU0263, HAU0263 (genetic_marker) gossypium spp

Marker Overview
NameHAU0263
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0263_F: CCTTTTGCTAAAGACCTCCA
Primer 2HAU0263_R: GCCATAAATATGGGCTTCAC
Product Length274
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:106949114..106949384 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:104289743..104290015 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold190.1supercontigscaffold190.1:1001564..1001834 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:98468347..98468617 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:111242991..111243261 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:109867838..109868108 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:108348316..108348586 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:103618898..103619168 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:100253294..100253566 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:100265562..100265836 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8817supercontigscaffold8817:78349..78621 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8817supercontigscaffold8817:90617..90891 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:103500391..103500663 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:105861868..105862140 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:105179197..105179469 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:112328301..112328573 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:106319724..106319996 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:111930490..111930760 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_03chromosomeB_03:1859728..1860030 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:43182421..43182679 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:36377831..36378093 -Gossypium gossypioides (D6) genome ISU_v1n/a
E03chromosomeE03:123845301..123845572 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:108612680..108612954 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:1933168..1933437 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A5.4HAU0263View
Sequence
>HAU0263 ID=HAU0263; Name=HAU0263; organism=Gossypium spp.; type=genetic_marker; length=274bp
CCTTTTGCTAAAGACCTCCATCTATAATGTGTGAGCTACAGTTTCTTGTT
GTACTGGTTTAATGGATAAGTTTTTGTTCCTCAAAATGAGATTGATATGT
GGTTTATTTTGTTCAATTGCATTTTGGATTGTCTTATATATGTGTGTATG
TGTGTCAGAGTTTTATGGATATTTGGTGATGAAATTACCAAATGTATAGC
AATTTGACTCTGGCTTGAGATGCCAGGAATGGGTTTTGGGTTGTTTTGAA
GCAGGTGAAGCCCATATTTATGGC