HAU0190, HAU0190 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0190
AliasHAU190
Genbank IDEU532375
TypeSSR
SpeciesGossypium barbadense
Source Typegenomic
Repeat Motif(AT)12
Primer 1HAU0190_F: CACACACACACAAAAAGGA
Primer 2HAU0190_R: GCCTATGACAAACCCAGAAG
ContactZhang, Xian-Long
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEU532375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:53002519..53002653 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:81417786..81417909 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:50206305..50206437 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:76613921..76614056 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:43294144..43294270 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:84548348..84548480 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:601269..601409 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold568.1supercontigscaffold568.1:434458..434592 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:50566485..50566619 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:74592399..74592522 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:52352038..52352172 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:81591956..81592079 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:51568181..51568303 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:82742585..82742708 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:52120806..52120940 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:83090707..83090830 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:50202781..50202915 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:79414669..79414792 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:78706808..78706941 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2500supercontigscaffold2500:319239..319371 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4764supercontigscaffold4764:209859..209992 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:51053403..51053535 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:77433791..77433924 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:53352533..53352665 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:78776648..78776781 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:51113039..51113177 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:78783271..78783396 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:52721264..52721396 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:82188880..82189011 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51690715..51690847 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:78907617..78907748 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:54010148..54010282 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:84870214..84870337 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:83935749..83935884 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:86683658..86683791 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:49530012..49530138 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:70098416..70098552 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:50415339..50415469 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:51492973..51493115 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:29958692..29958808 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:36790823..36790949 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:708573..708699 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:70200557..70200687 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:131794112..131794245 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A153.12HAU0190View
2DH962 X Ji Mian 5, F2 (2015)AD_ch23_Dt.09N/A153.12HAU0190View
3DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A51.5HAU0190View
4DH962 x Ji Mian 5, RIL (2015)AD_ch23_Dt.09N/A51.5HAU0190View
5GX1135 x GX100-2, RIL (2015)AD_ch09_At.09N/A59.9HAU190View
6GX1135 x GX100-2, RIL (2016)AD_ch09_At.09N/A59.9HAU190View
Sequence
>HAU0190 ID=HAU0190; Name=HAU0190; organism=Gossypium barbadense; type=genetic_marker; length=136bp
CACACACACACAAAAAGGAATATATATATATATATATATATATGCATTTT
TTAATTGGGTATGATTGACCAGAATGTGATATTGACATGGTGGCATAATA
ACAAACCTTCCTATCACTTCTGGGTTTGTCATAGGC