Gh454, Gh454 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh454
Genbank IDDQ908393
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908393
Source Typegenomic
Repeat MotifAGA(7)
Primer 1Gh454_F: GTTTCAAGCGAAGAAACCCAACTC
Primer 2Gh454_R: CCCCTGTATTGGTTCTTTGATTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908393
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:21752736..21752848 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:35928016..35928122 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:20901852..20901967 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:31899478..31899590 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:19988780..19988883 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:41299406..41299506 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:26738634..26738734 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:108067321..108067421 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:41840888..41840994 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:20425873..20425985 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:32187558..32187664 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:20532903..20533015 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:32675688..32675794 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:20325289..20325401 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:33220699..33220805 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:20072816..20072931 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:33564694..33564800 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:20504563..20504675 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:43599475..43599581 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3937supercontigscaffold3937:6521..6639 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3167supercontigscaffold3167:43632..43744 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3167supercontigscaffold3167:29506..29912 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:20838044..20838159 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:32661962..32662074 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:21038013..21038131 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:31856140..31856255 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:20900193..20900305 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:32154966..32155072 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:22098144..22098250 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:34281342..34281445 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:20995007..20995119 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:32176733..32176845 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:20860945..20861057 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:34431434..34431540 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:35912397..35912521 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:38373722..38373822 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:19877744..19877847 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:20173109..20173215 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:16648805..16648908 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:14785904..14786004 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:20112392..20112501 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:14437957..14438058 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:12054698..12054795 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:14388102..14388202 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:47468219..47468403 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:30346689..30346798 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:142695646..142695755 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeGh454:1..661 .
Chr04:19825705..19826364 -		n/a
Chr4chromosomeGh454:1..661 .
Chr4:19285584..19286243 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908393DQ908393Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A137.4Gh454View
2Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A57.2Gh454View
3Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A29.5Gh454View
4GX1135 x GX100-2, F2 (2013)AD_ch24_Dt.08N/A44.7Gh454View
5GX1135 x GX100-2, RIL (2016)AD_ch24_Dt.08N/A32.6Gh454View
6GX1135 x VGX100-2, RIL (2016)AD_ch24_Dt.08N/A61.1Gh454View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A59.9Gh454View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A128.6Gh454View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A44.69Gh454View
Sequence
>Gh454 ID=Gh454; Name=Gh454; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
GTTTCAAGCGAAGAAACCCAACTCCGTATGTGAAATTCTATACAAACATA
GAAAACGGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATCAAAGAACCAAT
ACAGGGG