Gh345, Gh345 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh345
Genbank IDDQ908284
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908284
Source Typegenomic
Repeat MotifAG(20)
Primer 1Gh345_F: ATTTGAGACTTCCAACCAGATACAG
Primer 2Gh345_R: TTCTAAAGTTCTCTCTTCTCCAAACC
PolymorphismP_ Gh345
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908284
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:8287675..8287786 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:7854008..7854113 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr1chromosomeDt_chr1:39520427..39520538 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7817710..7817821 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:8134453..8134564 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:9310116..9310201 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7806450..7806561 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:8085691..8085800 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7940432..7940543 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:8835784..8835887 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8582supercontigscaffold8582:245151..245236 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8582supercontigscaffold8582:231480..231565 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8254supercontigscaffold8254:134860..134963 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:8145683..8145784 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:9120075..9120160 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7986858..7986961 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:8282981..8283080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:8309153..8309272 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:8112423..8112524 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:8218593..8218704 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr_01chromosomeChr_01:7550447..7550644 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:6859535..6859726 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeGh345:1..485 .
Chr01:7695743..7696204 -		n/a
scaffold469supercontigGh345:1..485 .
scaffold469:155427..155888 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908284DQ908284Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A91.96Gh345bView
2TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A39.3GH345View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A48.8GH345View
4Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A49GH345View
5DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A108.31GH345View
6DH962 X Ji Mian 5, F2 (2015)AD_ch16_Dt.07N/A108.31GH345View
7TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A86.1GH345View
8DH962 x Ji Mian 5, RIL (2015)AD_ch16_Dt.07N/A11.3GH345View
9Pima-S7 x NemX, F2 (2011)AD_ch16_Dt.07N/A42.8Gh345_116/126View
10TM-1 x 3-79, RIL (2011)AD_ch16_Dt.07N/A30.3Gh345_122/113View
11TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A86.09GH345View
12TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A78.9Gh345-100View
Sequence
>Gh345 ID=Gh345; Name=Gh345; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
ATTTGAGACTTCCAACCAGATACAGAAAAGTTGAAGAAGAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGGTTTGGAGAAGAG
AGAACTTTAGAA