Gh325, Gh325 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh325
Genbank IDDQ908264
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908264
Source Typegenomic
Repeat MotifTC(16)
Primer 1Gh325_F: GTATGTGTTGCACTGGATTCCAG
Primer 2Gh325_R: GATACGAGACTAGATTCACAATCTTC
PolymorphismP_ Gh325
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908264
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:69713571..69713705 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:65640296..65640444 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:61525611..61525742 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:61015180..61015300 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D08chromosomeD08:65710554..65710688 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:68603808..68603942 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:68849755..68849889 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:68452739..68452871 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:65752859..65752993 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold47709supercontigscaffold47709:7686..7834 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:65769642..65769777 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:67487788..67487936 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:67270659..67270829 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:69461789..69461911 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:66046768..66046918 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:69181510..69181642 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:62434745..62434877 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:104246782..104246906 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:64154728..64154866 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:48799711..48799830 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:46216433..46216555 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:66337900..66338020 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36414806..36414936 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:44665234..44665358 -Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:104401542..104401654 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:262724..262843 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908264DQ908264Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A137.71Gh325View
2TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A115.87Gh325View
3Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A166.4Gh325View
4TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A121.9Gh325View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A151.1Gh325View
6TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A121.91GH325View
Sequence
>Gh325 ID=Gh325; Name=Gh325; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
GTATGTGTTGCACTGGATTCCAGTTTCTCCTCTCCTCTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTAGAATTATTACGTCTGAATTTTATTAAG
AAATTATATGAAGATTGTGAATCTAGTCTCGTATC