Gh273, Gh273 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh273
Genbank IDDQ908213
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908213
Source Typegenomic
Repeat MotifGA(9)
Primer 1Gh273_F: TTGCTTCGTTTTCTTCCCTGGTG
Primer 2Gh273_R: AAGCAAAGACCAGCTTCTCTTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908213
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:64010449..64010546 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:60230751..60230844 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold862.1supercontigscaffold862.1:681983..682080 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:9607559..9607656 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:60746450..60746547 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:63208922..63209018 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:63627451..63627548 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:63045128..63045225 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:60337521..60337614 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold13952supercontigscaffold13952:82029..82122 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13952supercontigscaffold13952:79530..79623 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:60349650..60349743 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:62213428..62213521 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:61869301..61869400 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:64099169..64099262 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:60622771..60622864 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:63830455..63830552 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:61185669..61185764 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908213DQ908213Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A58.2GH273View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A96.8GH273View
3TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A60.9GH273View
4GX1135 x GX100-2, F2 (2013)AD_ch24_Dt.08N/A27.2GH273View
5GX1135 x GX100-2, RIL (2016)AD_ch24_Dt.08N/A86.3GH273View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A43.1GH273View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A92.65Gh273View
8TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A64.24GH273View
Sequence
>Gh273 ID=Gh273; Name=Gh273; organism=Gossypium hirsutum; type=genetic_marker; length=98bp
TTGCTTCGTTTTCTTCCCTGGTGAGAGAGAGAAAGAGAGAGAGAGAGAGA
GAGGAGAATATATATAAATAAAAGGGGAAGAGAAGCTGGTCTTTGCTT