Gh199, Gh199 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh199
Genbank IDDQ908141
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908141
Source Typegenomic
Repeat MotifGA(10)
Primer 1Gh199_F: CAAAAAGAATATGAATGAGTCAATAGAC
Primer 2Gh199_R: CAATAAATGCCATAATCTTTCAACTCAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908141
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:101889631..101889710 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:99526138..99526255 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:13052068..13052185 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:617619..617698 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:91231824..91231903 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:104965349..104965428 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:105777929..105778008 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:105091421..105091500 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:100232057..100232140 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:96792549..96792662 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22373supercontigscaffold22373:66558..66671 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:99856715..99856828 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:101428632..101428747 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:100937266..100937407 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:108238069..108238172 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:102958881..102958984 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:108178340..108178419 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:116645361..116645446 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:111136044..111136161 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908141DQ908141Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A60.84Gh199View
2TM-1 x 3-79, RIL (2012)AD_ch10_At.10N/A22.5Gh199View
3Yumian-1 x T586, RIL (2015)AD_ch10_At.10N/A86.1Gh199View
4TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A28.5Gh199View
5GX1135 x GX100-2, F2 (2013)AD_ch10_At.10N/A65.1Gh199View
6GX1135 x GX100-2, RIL (2015)AD_ch10_At.10N/A0Gh199View
7GX1135 x GX100-2, RIL (2016)AD_ch10_At.10N/A0Gh199View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A110.01Gh199View
9TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A28.45GH199View
Sequence
>Gh199 ID=Gh199; Name=Gh199; organism=Gossypium hirsutum; type=genetic_marker; length=84bp
CAAAAAGAATATGAATGAGTCAATAGACGAGAGAGAGAGAGAGAGAGAAT
TGAAGTGTGAGTTGAAAGATTATGGCATTTATTG