Gh064, Gh064 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh064
AliasGh64
Genbank IDDQ908006
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908006
Source Typegenomic
Repeat MotifCA(12)
Primer 1Gh064_F: GAGAAGCCAATCCCATTTAAGA
Primer 2Gh064_R: GATAGTGCATCTCTAGAGAAGGACA
PolymorphismP_ Gh064
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908006
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:2315190..2315314 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:2582475..2582613 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:2543960..2544098 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:2298828..2298956 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:2349344..2349484 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:55144620..55144736 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:100508706..100508838 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:1937508..1937628 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:123431374..123431490 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:56894146..56894270 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:2434466..2434604 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4653_D12supercontigscaffold4653_D12:17124..17248 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:2299807..2299931 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:2484733..2484871 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:2280799..2280923 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:2430440..2430578 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:2308416..2308540 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:2517334..2517472 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:2326328..2326452 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:2489415..2489553 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5289supercontigscaffold5289:20641..20791 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12780supercontigscaffold12780:171415..171543 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:2273774..2273902 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:2347530..2347670 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:2237300..2237428 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:2367124..2367264 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:2204333..2204479 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:2300249..2300391 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:2204597..2204743 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:2567549..2567705 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:2262920..2263038 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:2199892..2200024 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:2401747..2401871 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:2521797..2521935 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:2431941..2432071 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:2441650..2441782 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:2267077..2267193 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:2568247..2568369 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:2129922..2130042 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:2117714..2117842 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:2083198..2083318 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:2165491..2165629 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:1520606..1520724 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:2064209..2064325 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr12chromosomeChr12:2438884..2438998 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeGh064:1..588 .
Chr08:2253717..2254299 +		n/a
Chr8chromosomeGh064:1..588 .
Chr8:66150342..66150924 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908006DQ908006Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A71.1Gh064View
2Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A12.1Gh064View
3Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A133.9Gh064View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A138.1Gh064View
5GX1135 x GX100-2, F2 (2013)AD_ch12_At.12N/A15.9GH64View
6GX1135 x GX100-2, RIL (2015)AD_ch26_Dt.12N/A71.3GH64View
7GX1135 x GX100-2, RIL (2016)AD_ch26_Dt.12N/A71.3GH64View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A78.5GH64View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A14.51Gh064View
Sequence
>Gh064 ID=Gh064; Name=Gh064; organism=Gossypium hirsutum; type=genetic_marker; length=123bp
GAGAAGCCAATCCCATTTAAGAAATGAATTGATTTAATCCAAAATACTCA
ATCTAATCAGTCTTTCACACACACACACACACACACACATGTATTAATTG
TCCTTCTCTAGAGATGCACTATC