DPL0613, DPL0613 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0613
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0613_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0613_F: CACATGTCGGTTATACATTGACG
Primer 2DPL0613_R: TCCTAATTCGGTACATGAACTTGAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:120351303..120351543 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:114985438..114985656 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:130471363..130471591 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1329_A06supercontigscaffold1329_A06:193258..193498 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65601339..65601546 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:122884297..122884539 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:1353575..1353715 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:125350585..125350825 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:124963068..124963308 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:120756334..120756564 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:65216047..65216254 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9863supercontigscaffold9863:159486..159704 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8883supercontigscaffold8883:118398..118605 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:61819124..61819331 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:113998890..113999108 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:1050151..1050290 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:117056589..117056807 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:120430267..120430487 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:125667008..125667240 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:118282387..118282607 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:127042923..127043163 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:127691618..127691856 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:129830299..129830527 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0613_origDPL0613_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A12.8DPL0613View
2W10 x TM-1, F2:3 (2015)AD_chUN/A53.3DPL0613View
3Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A61DPL0613View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch06_At.06N/A0MON_DPL0613View
5TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A12.76DPL0613View
6TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A8.4dPL0613-220View
Sequence
>DPL0613 ID=DPL0613; Name=DPL0613; organism=Gossypium hirsutum; type=genetic_marker; length=231bp
CACATGTCGGTTATACATTGACGATTTTTACTACCTCGTAAAAATATAAC
ATTGTTAGTGTATTGGATTAATTTGTAAAACGTTTGACAAGTTCAAGTAC
CAAATTAGACAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCA
AGTTTGAGTGCCAAATTGGACCTAAAAAACGATTAAGTACTAAATTAAGA
AAAAATGTCAAGTTCATGTACCGAATTAGGA